AIMC Topic: Microscopy, Fluorescence

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Incorporating the image formation process into deep learning improves network performance.

Nature methods
We present Richardson-Lucy network (RLN), a fast and lightweight deep learning method for three-dimensional fluorescence microscopy deconvolution. RLN combines the traditional Richardson-Lucy iteration with a fully convolutional network structure, es...

Rationalized deep learning super-resolution microscopy for sustained live imaging of rapid subcellular processes.

Nature biotechnology
The goal when imaging bioprocesses with optical microscopy is to acquire the most spatiotemporal information with the least invasiveness. Deep neural networks have substantially improved optical microscopy, including image super-resolution and restor...

Simple and Robust Deep Learning Approach for Fast Fluorescence Lifetime Imaging.

Sensors (Basel, Switzerland)
Fluorescence lifetime imaging (FLIM) is a powerful tool that provides unique quantitative information for biomedical research. In this study, we propose a multi-layer-perceptron-based mixer (MLP-Mixer) deep learning (DL) algorithm named FLIM-MLP-Mixe...

Self-supervised classification of subcellular morphometric phenotypes reveals extracellular matrix-specific morphological responses.

Scientific reports
Cell morphology is profoundly influenced by cellular interactions with microenvironmental factors such as the extracellular matrix (ECM). Upon adhesion to specific ECM, various cell types are known to exhibit different but distinctive morphologies, s...

Development of Deep-Learning-Based Single-Molecule Localization Image Analysis.

International journal of molecular sciences
Recent developments in super-resolution fluorescence microscopic techniques (SRM) have allowed for nanoscale imaging that greatly facilitates our understanding of nanostructures. However, the performance of single-molecule localization microscopy (SM...

MP-Net: Deep learning-based segmentation for fluorescence microscopy images of microplastics isolated from clams.

PloS one
Environmental monitoring of microplastics (MP) contamination has become an area of great research interest, given potential hazards associated with human ingestion of MP. In this context, determination of MP concentration is essential. However, cheap...

Deep learning enables reference-free isotropic super-resolution for volumetric fluorescence microscopy.

Nature communications
Volumetric imaging by fluorescence microscopy is often limited by anisotropic spatial resolution, in which the axial resolution is inferior to the lateral resolution. To address this problem, we present a deep-learning-enabled unsupervised super-reso...

VGG-UNet/VGG-SegNet Supported Automatic Segmentation of Endoplasmic Reticulum Network in Fluorescence Microscopy Images.

Scanning
This research work aims to implement an automated segmentation process to extract the endoplasmic reticulum (ER) network in fluorescence microscopy images (FMI) using pretrained convolutional neural network (CNN). The threshold level of the raw FMT i...

Deep learning for blind structured illumination microscopy.

Scientific reports
Blind-structured illumination microscopy (blind-SIM) enhances the optical resolution without the requirement of nonlinear effects or pre-defined illumination patterns. It is thus advantageous in experimental conditions where toxicity or biological fl...

High-throughput widefield fluorescence imaging of 3D samples using deep learning for 2D projection image restoration.

PloS one
Fluorescence microscopy is a core method for visualizing and quantifying the spatial and temporal dynamics of complex biological processes. While many fluorescent microscopy techniques exist, due to its cost-effectiveness and accessibility, widefield...