AIMC Topic: Protein Transport

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Hum-mPLoc 3.0: prediction enhancement of human protein subcellular localization through modeling the hidden correlations of gene ontology and functional domain features.

Bioinformatics (Oxford, England)
MOTIVATION: Protein subcellular localization prediction has been an important research topic in computational biology over the last decade. Various automatic methods have been proposed to predict locations for large scale protein datasets, where stat...

SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.

Bioinformatics (Oxford, England)
MOTIVATION: Chloroplasts are organelles found in plants and involved in several important cell processes. Similarly to other compartments in the cell, chloroplasts have an internal structure comprising several sub-compartments, where different protei...

MSLVP: prediction of multiple subcellular localization of viral proteins using a support vector machine.

Molecular bioSystems
Knowledge of the subcellular location (SCL) of viral proteins in the host cell is important for understanding their function in depth. Therefore, we have developed "MSLVP", a two-tier prediction algorithm for predicting multiple SCLs of viral protein...

Computer-based prediction of mitochondria-targeting peptides.

Methods in molecular biology (Clifton, N.J.)
Computational methods are invaluable when protein sequences, directly derived from genomic data, need functional and structural annotation. Subcellular localization is a feature necessary for understanding the protein role and the compartment where t...

Introduction to the analysis of the intracellular sorting information in protein sequences: from molecular biology to artificial neural networks.

Methods in molecular biology (Clifton, N.J.)
A precise spatial-temporal organization of cell components is required for basic cellular activities such as proliferation and for complex multicellular processes such as embryo development. Particularly important is the maintenance and control of th...