AIMC Topic: PubMed

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Using sentiment analysis to identify similarities and differences in research topics and medical subject headings (MeSH terms) between Medicine (Baltimore) and the Journal of the Formosan Medical Association (JFMA) in 2020: A bibliometric study.

Medicine Mar 18, 2022
BACKGROUND:: Little systematic information has been collected about the nature and types of articles published in 2 journals by identifying the latent topics and analyzing the extracted research themes and sentiments using text mining and machine lea...
Humans Medical Subject Headings Sentiment Analysis PubMed Bibliometrics
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Gender-sensitive word embeddings for healthcare.

Journal of the American Medical Informatics Association : JAMIA Jan 29, 2022
OBJECTIVE: To analyze gender bias in clinical trials, to design an algorithm that mitigates the effects of biases of gender representation on natural-language (NLP) systems trained on text drawn from clinical trials, and to evaluate its performance.
Sexism Clinical Trials as Topic Male Female Humans Delivery of Health Care PubMed Natural Language Processing
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BioBERT and Similar Approaches for Relation Extraction.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2022
In biomedicine, facts about relations between entities (disease, gene, drug, etc.) are hidden in the large trove of 30 million scientific publications. The curated information is proven to play an important role in various applications such as drug r...
Information Storage and Retrieval PubMed Natural Language Processing Publications Language
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Text Mining and Machine Learning Protocol for Extracting Human-Related Protein Phosphorylation Information from PubMed.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2022
In the modern health care research, protein phosphorylation has gained an enormous attention from the researchers across the globe and requires automated approaches to process a huge volume of data on proteins and their modifications at the cellular ...
Phosphorylation Natural Language Processing Proteins Data Mining PubMed Machine Learning Humans
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Artificial intelligence behind the scenes: PubMed's Best Match algorithm.

Journal of the Medical Library Association : JMLA Jan 1, 2022
This article focuses on PubMed's Best Match sorting algorithm, presenting a simplified explanation of how it operates and highlighting how artificial intelligence affects search results in ways that are not seen by users. We further discuss user sear...
Artificial Intelligence Algorithms PubMed
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The Classification of Short Scientific Texts Using Pretrained BERT Model.

Studies in health technology and informatics May 27, 2021
Automated text classification is a natural language processing (NLP) technology that could significantly facilitate scientific literature selection. A specific topical dataset of 630 article abstracts was obtained from the PubMed database. We propose...
PubMed Natural Language Processing
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Text mining for modeling of protein complexes enhanced by machine learning.

Bioinformatics (Oxford, England) May 1, 2021
MOTIVATION: Procedures for structural modeling of protein-protein complexes (protein docking) produce a number of models which need to be further analyzed and scored. Scoring can be based on independently determined constraints on the structure of th...
Proteins Support Vector Machine Data Mining PubMed Machine Learning
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Large-scale entity representation learning for biomedical relationship extraction.

Bioinformatics (Oxford, England) Apr 19, 2021
MOTIVATION: The automatic extraction of published relationships between molecular entities has important applications in many biomedical fields, ranging from Systems Biology to Personalized Medicine. Existing works focused on extracting relationships...
PubMed Publications Semantics Data Mining Neural Networks, Computer Software
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Health informatics publication trends in Saudi Arabia: a bibliometric analysis over the last twenty-four years.

Journal of the Medical Library Association : JMLA Apr 1, 2021
OBJECTIVE: Understanding health informatics (HI) publication trends in Saudi Arabia may serve as a framework for future research efforts and contribute toward meeting national "e-Health" goals. The authors' intention was to understand the state of th...
Medical Informatics Bibliometrics Saudi Arabia PubMed Artificial Intelligence
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Biomedical named entity recognition and linking datasets: survey and our recent development.

Briefings in bioinformatics Dec 1, 2020
Natural language processing (NLP) is widely applied in biological domains to retrieve information from publications. Systems to address numerous applications exist, such as biomedical named entity recognition (BNER), named entity normalization (NEN) ...
Surveys and Questionnaires Data Mining Software Natural Language Processing Information Storage and Retrieval Databases, Factual Computational Biology Neural Networks, Computer PubMed
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