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RNA, Circular

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CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization.

BMC bioinformatics
BACKGROUND: Circular RNAs (circRNAs) play a significant role in some diseases by acting as transcription templates. Therefore, analyzing the interaction mechanism between circRNA and RNA-binding proteins (RBPs) has far-reaching implications for the p...

CRBP-HFEF: Prediction of RBP-Binding Sites on circRNAs Based on Hierarchical Feature Expansion and Fusion.

Interdisciplinary sciences, computational life sciences
Circular RNAs (circRNAs) participate in the regulation of biological processes by binding to specific proteins and thus influence transcriptional processes. In recent years, circRNAs have become an emerging hotspot in RNA research. Due to powerful le...

Predicting CircRNA-Disease Associations via Feature Convolution Learning With Heterogeneous Graph Attention Network.

IEEE journal of biomedical and health informatics
Exploring the relationship between circular RNA (circRNA) and disease is beneficial for revealing the mechanisms of disease pathogenesis. However, a blind search for all possible associations between circRNAs and diseases through biological experimen...

MPCLCDA: predicting circRNA-disease associations by using automatically selected meta-path and contrastive learning.

Briefings in bioinformatics
Circular RNA (circRNA) is closely associated with human diseases. Accordingly, identifying the associations between human diseases and circRNA can help in disease prevention, diagnosis and treatment. Traditional methods are time consuming and laborio...

MLNGCF: circRNA-disease associations prediction with multilayer attention neural graph-based collaborative filtering.

Bioinformatics (Oxford, England)
MOTIVATION: CircRNAs play a critical regulatory role in physiological processes, and the abnormal expression of circRNAs can mediate the processes of diseases. Therefore, exploring circRNAs-disease associations is gradually becoming an important area...

DeepCIP: A multimodal deep learning method for the prediction of internal ribosome entry sites of circRNAs.

Computers in biology and medicine
Circular RNAs (circRNAs) have been found to have the ability to encode proteins through internal ribosome entry sites (IRESs), which are essential RNA regulatory elements for cap-independent translation. Identification of IRES elements in circRNA is ...

CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal Intermediate Fusion.

IEEE/ACM transactions on computational biology and bioinformatics
Circular RNA (CircRNA) is widely expressed and has physiological and pathological significance, regulating post-transcriptional processes via its protein-binding activity. However, whereas much work has been done on linear RNA and RNA binding protein...

NGCICM: A Novel Deep Learning-Based Method for Predicting circRNA-miRNA Interactions.

IEEE/ACM transactions on computational biology and bioinformatics
The circRNAs and miRNAs play an important role in the development of human diseases, and they can be widely used as biomarkers of diseases for disease diagnosis. In particular, circRNAs can act as sponge adsorbers for miRNAs and act together in certa...

BioKA: a curated and integrated biomarker knowledgebase for animals.

Nucleic acids research
Biomarkers play an important role in various area such as personalized medicine, drug development, clinical care, and molecule breeding. However, existing animals' biomarker resources predominantly focus on human diseases, leaving a significant gap i...

THGNCDA: circRNA-disease association prediction based on triple heterogeneous graph network.

Briefings in functional genomics
Circular RNAs (circRNAs) are a class of noncoding RNA molecules featuring a closed circular structure. They have been proved to play a significant role in the reduction of many diseases. Besides, many researches in clinical diagnosis and treatment of...