AIMC Topic: Subcellular Fractions

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ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network.

Plant physiology Apr 25, 2017
Higher plants, as autotrophic organisms, are effective sources of molecules. They hold great promise for metabolic engineering, but the behavior of plant metabolism at the network level is still incompletely described. Although structural models (sto...
Chloroplasts Arabidopsis Knowledge Bases Metabolic Networks and Pathways Subcellular Fractions Internet
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Predicting protein subcellular localization based on information content of gene ontology terms.

Computational biology and chemistry Sep 14, 2016
Predicting the location where a protein resides within a cell is important in cell biology. Computational approaches to this issue have attracted more and more attentions from the community of biomedicine. Among the protein features used to predict t...
Gene Ontology Subcellular Fractions Support Vector Machine Proteins Databases, Protein
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Deep generative model for protein subcellular localization prediction.

Briefings in bioinformatics Mar 4, 2025
Protein sequence not only determines its structure but also provides important clues of its subcellular localization. Although a series of artificial intelligence models have been reported to predict protein subcellular localization, most of them pro...
Computational Biology Proteins Deep Learning Cytoplasm Subcellular Fractions Cell Nucleus Protein Transport Humans
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PScL-HDeep: image-based prediction of protein subcellular location in human tissue using ensemble learning of handcrafted and deep learned features with two-layer feature selection.

Briefings in bioinformatics Nov 5, 2021
Protein subcellular localization plays a crucial role in characterizing the function of proteins and understanding various cellular processes. Therefore, accurate identification of protein subcellular location is an important yet challenging task. Nu...
Support Vector Machine Proteins Subcellular Fractions Deep Learning Computational Biology Humans
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DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism.

Nucleic acids research May 7, 2021
Subcellular localization of messenger RNAs (mRNAs), as a prevalent mechanism, gives precise and efficient control for the translation process. There is mounting evidence for the important roles of this process in a variety of cellular events. Computa...
Cell Membrane Gene Ontology Cell Nucleus Subcellular Fractions Endoplasmic Reticulum Ribosomes Cytosol Proteomics Databases, Genetic Databases, Protein Exosomes Computational Biology RNA, Messenger Transcriptome Humans Neural Networks, Computer
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[Prediction of protein subcellular localization based on multilayer sparse coding].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology Apr 25, 2019
In order to provide a theoretical basis for better understanding the function and properties of proteins, we proposed a simple and effective feature extraction method for protein sequences to determine the subcellular localization of proteins. First,...
Algorithms Computational Biology Protein Transport Proteins Subcellular Fractions Support Vector Machine Amino Acid Sequence
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HPSLPred: An Ensemble Multi-Label Classifier for Human Protein Subcellular Location Prediction with Imbalanced Source.

Proteomics Sep 1, 2017
Predicting the subcellular localization of proteins is an important and challenging problem. Traditional experimental approaches are often expensive and time-consuming. Consequently, a growing number of research efforts employ a series of machine lea...
Intracellular Space Subcellular Fractions Databases, Protein Machine Learning Protein Transport Computational Biology Humans Proteins
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