AIMC Topic: TATA Box

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promSEMBLE: Hard Pattern Mining and Ensemble Learning for Detecting DNA Promoter Sequences.

IEEE/ACM transactions on computational biology and bioinformatics Feb 5, 2024
Accurate identification of DNA promoter sequences is of crucial importance in unraveling the underlying mechanisms that regulate gene transcription. Initiation of transcription is controlled through regulatory transcription factors binding to promote...
Machine Learning DNA Base Sequence Promoter Regions, Genetic Transcription, Genetic TATA Box
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iProm-Zea: A two-layer model to identify plant promoters and their types using convolutional neural network.

Genomics May 6, 2022
A promoter is a short DNA sequence near the start codon, responsible for initiating the transcription of a specific gene in the genome. The accurate recognition of promoters is important for achieving a better understanding of transcriptional regulat...
Neural Networks, Computer Algorithms Zea mays Base Sequence Promoter Regions, Genetic TATA Box
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iPTT(2 L)-CNN: A Two-Layer Predictor for Identifying Promoters and Their Types in Plant Genomes by Convolutional Neural Network.

Computational and mathematical methods in medicine Jan 5, 2021
A promoter is a short DNA sequence near to the start codon, responsible for initiating transcription of a specific gene in genome. The accurate recognition of promoters has great significance for a better understanding of the transcriptional regulati...
Neural Networks, Computer Computational Biology Sequence Analysis, DNA Zea mays Species Specificity Promoter Regions, Genetic Databases, Nucleic Acid Genome, Plant DNA, Plant TATA Box
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Identification of the human DPR core promoter element using machine learning.

Nature Sep 9, 2020
The RNA polymerase II (Pol II) core promoter is the strategic site of convergence of the signals that lead to the initiation of DNA transcription, but the downstream core promoter in humans has been difficult to understand. Here we analyse the human ...
Humans Computer Simulation Models, Genetic Support Vector Machine High-Throughput Nucleotide Sequencing HeLa Cells Datasets as Topic Gene Expression Regulation Base Sequence Promoter Regions, Genetic Mutagenesis Transcription, Genetic Cells RNA Polymerase II Consensus Sequence TATA Box
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