AIMC Topic: Unified Medical Language System

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Translating UMLS Concepts to Improve Medical Entity Linking in French: A SapBERT-Based Approach.

Studies in health technology and informatics
Medical Entity Linking (MEL) refers to the task of automatically detecting and codifying medical concepts, which is an important preprocessing step for exploiting unstructured medical reports. SapBERT is an efficient MEL method for the English langua...

Application of unified health large language model evaluation framework to In-Basket message replies: bridging qualitative and quantitative assessments.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVES: Large language models (LLMs) are increasingly utilized in healthcare, transforming medical practice through advanced language processing capabilities. However, the evaluation of LLMs predominantly relies on human qualitative assessment, w...

CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVES: Biomedical Knowledge Graphs play a pivotal role in various biomedical research domains. Concurrently, term clustering emerges as a crucial step in constructing these knowledge graphs, aiming to identify synonymous terms. Due to a lack of ...

BioLORD-2023: semantic textual representations fusing large language models and clinical knowledge graph insights.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: In this study, we investigate the potential of large language models (LLMs) to complement biomedical knowledge graphs in the training of semantic models for the biomedical and clinical domains.

Merging Biomedical Ontologies with BioSTransformers.

Studies in health technology and informatics
Ontologies play a key role in representing and structuring domain knowledge. In the biomedical domain, the need for this type of representation is crucial for structuring, coding, and retrieving data. However, available ontologies do not encompass al...

Knowledge Base Prototype Creating with Using Interdisciplinary Metathesaurus.

Studies in health technology and informatics
This article presents our experience in development an ontological model can be used in clinical decision support systems (CDSS) creating. We have used the largest international biomedical terminological metathesaurus the Unified Medical Language Sys...

BELHD: improving biomedical entity linking with homonym disambiguation.

Bioinformatics (Oxford, England)
MOTIVATION: Biomedical entity linking (BEL) is the task of grounding entity mentions to a given knowledge base (KB). Recently, neural name-based methods, system identifying the most appropriate name in the KB for a given mention using neural network ...

Streamlining social media information retrieval for public health research with deep learning.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Social media-based public health research is crucial for epidemic surveillance, but most studies identify relevant corpora with keyword-matching. This study develops a system to streamline the process of curating colloquial medical diction...

Secondary Use of Clinical Problem List Descriptions for Bi-Encoder Based ICD-10 Classification.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Annotated language resources are essential for supervised machine learning methods. In the clinical domain, such data sets can boost use-case specific natural language processing services. In this work, we have analyzed a clinical problem list table ...

Development of a Human Evaluation Framework and Correlation with Automated Metrics for Natural Language Generation of Medical Diagnoses.

AMIA ... Annual Symposium proceedings. AMIA Symposium
In the evolving landscape of clinical Natural Language Generation (NLG), assessing abstractive text quality remains challenging, as existing methods often overlook generative task complexities. This work aimed to examine the current state of automate...