AIMC Topic: Vocabulary, Controlled

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Special supplement issue on quality assurance and enrichment of biological and biomedical ontologies and terminologies.

BMC medical informatics and decision making Aug 30, 2024
Ontologies and terminologies serve as the backbone of knowledge representation in biomedical domains, facilitating data integration, interoperability, and semantic understanding across diverse applications. However, the quality assurance and enrichme...
Humans Biological Ontologies Vocabulary, Controlled Electronic Health Records COVID-19
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Coordinating virus research: The Virus Infectious Disease Ontology.

PloS one Jan 18, 2024
The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies-structured, controlled, vocabularies-are designed...
COVID-19 Virus Diseases Biological Ontologies Vocabulary, Controlled Communicable Diseases Humans Pandemics
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The use of foundational ontologies in biomedical research.

Journal of biomedical semantics Dec 11, 2023
BACKGROUND: The FAIR principles recommend the use of controlled vocabularies, such as ontologies, to define data and metadata concepts. Ontologies are currently modelled following different approaches, sometimes describing conflicting definitions of ...
Biomedical Research Biological Ontologies Vocabulary, Controlled
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Features of a FAIR vocabulary.

Journal of biomedical semantics Jun 1, 2023
BACKGROUND: The Findable, Accessible, Interoperable and Reusable(FAIR) Principles explicitly require the use of FAIR vocabularies, but what precisely constitutes a FAIR vocabulary remains unclear. Being able to define FAIR vocabularies, identify feat...
Biological Ontologies Vocabulary, Controlled Vocabulary
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MedLexSp - a medical lexicon for Spanish medical natural language processing.

Journal of biomedical semantics Feb 2, 2023
BACKGROUND: Medical lexicons enable the natural language processing (NLP) of health texts. Lexicons gather terms and concepts from thesauri and ontologies, and linguistic data for part-of-speech (PoS) tagging, lemmatization or natural language genera...
Vocabulary, Controlled Natural Language Processing Unified Medical Language System Semantics COVID-19 Language Humans
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Semisupervised neural biomedical sense disambiguation approach for aspect-based sentiment analysis on social networks.

Journal of biomedical informatics Oct 25, 2022
Patient narratives on social networks contain large amounts of objective information, such as the descriptions of examinations and interventions. Sentiment analysis (SA) models are mostly used to evaluate the conveyed sentiments by patients in these ...
Vocabulary, Controlled Humans Medical Subject Headings Algorithms Sentiment Analysis Social Networking
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DCSO: towards an ontology for machine-actionable data management plans.

Journal of biomedical semantics Jul 26, 2022
The concept of Data Management Plan (DMP) has emerged as a fundamental tool to help researchers through the systematical management of data. The Research Data Alliance DMP Common Standard (DCS) working group developed a set of universal concepts char...
Vocabulary, Controlled Data Management Biological Ontologies
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SiBERT: A Siamese-based BERT network for Chinese medical entities alignment.

Methods (San Diego, Calif.) Jul 4, 2022
Entity alignment aims at associating semantically similar entities in knowledge graphs from different sources. It is widely used in the integration and construction of professional medical knowledge. The existing deep learning methods lack term-level...
Deep Learning Semantics China Algorithms Electronic Health Records Vocabulary, Controlled
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Semantic Search for Large Scale Clinical Ontologies.

AMIA ... Annual Symposium proceedings. AMIA Symposium Feb 21, 2022
Finding concepts in large clinical ontologies can be challenging when queries use different vocabularies. A search algorithm that overcomes this problem is useful in applications such as concept normalisation and ontology matching, where concepts can...
Biological Ontologies Algorithms Humans Vocabulary Vocabulary, Controlled Semantics
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A Data-Driven Iterative Approach for Semi-automatically Assessing the Correctness of Medication Value Sets: A Proof of Concept Based on Opioids.

Methods of information in medicine Dec 29, 2021
BACKGROUND: Value sets are lists of terms (e.g., opioid medication names) and their corresponding codes from standard clinical vocabularies (e.g., RxNorm) created with the intent of supporting health information exchange and research. Value sets are ...
Natural Language Processing Vocabulary, Controlled Algorithms Analgesics, Opioid
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