Explainable artificial intelligence-driven prostate cancer screening using exosomal multi-marker based dual-gate FET biosensor.

Journal: Biosensors & bioelectronics
PMID:

Abstract

Prostate Imaging Reporting and Data System (PI-RADS) score, a reporting system of prostate MRI cases, has become a standard prostate cancer (PCa) screening method due to exceptional diagnosis performance. However, PI-RADS 3 lesions are an unmet medical need because PI-RADS provides diagnosis accuracy of only 30-40% at most, accompanied by a high false-positive rate. Here, we propose an explainable artificial intelligence (XAI) based PCa screening system integrating a highly sensitive dual-gate field-effect transistor (DGFET) based multi-marker biosensor for ambiguous lesions identification. This system produces interpretable results by analyzing sensing patterns of three urinary exosomal biomarkers, providing a possibility of an evidence-based prediction from clinicians. In our results, XAI-based PCa screening system showed a high accuracy with an AUC of 0.93 using 102 blinded samples with the non-invasive method. Remarkably, the PCa diagnosis accuracy of patients with PI-RADS 3 was more than twice that of conventional PI-RADS scoring. Our system also provided a reasonable explanation of its decision that TMEM256 biomarker is the leading factor for screening those with PI-RADS 3. Our study implies that XAI can facilitate informed decisions, guided by insights into the significance of visualized multi-biomarkers and clinical factors. The XAI-based sensor system can assist healthcare professionals in providing practical and evidence-based PCa diagnoses.

Authors

  • Jae Yi Choi
    Center for Advanced Biomolecular Recognition, Biomedical Research Division, Korea Institute of Science and Technology, Seoul, 02792, Republic of Korea; Department of Medical Device Engineering and Management, College of Medicine, Yonsei University, Seoul, 06229, Republic of Korea.
  • Sungwook Park
    Biomaterials Research Center, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea.
  • Ji Sung Shim
    Department of Urology and Anam Hospital, Korea University College of Medicine, Seoul, Korea.
  • Hyung Joon Park
    Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.
  • Sung Uk Kuh
    Department of Medical Device Engineering and Management, College of Medicine, Yonsei University, Seoul, 06229, Republic of Korea; Department of Neurosurgery, College of Medicine, Yonsei University, Seoul, 03722, Republic of Korea.
  • Youngdo Jeong
    Biomaterials Research Center, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea.
  • Min Gu Park
    Department of Urology, College of Medicine, Korea University, Seoul, 02841, Republic of Korea.
  • Tae Il Noh
    Department of Urology and Anam Hospital, Korea University College of Medicine, Seoul, Korea.
  • Sung Goo Yoon
    Department of Urology, College of Medicine, Korea University, Seoul, 02841, Republic of Korea.
  • Yoo Min Park
    Center for Nano Bio Development, National Nanofab Center (NNFC), Daejeon, 34141, Republic of Korea.
  • Seok Jae Lee
    Division of Nano-Bio Sensors/Chips Development, National NanoFab Center (NNFC), 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
  • Hojun Kim
    Department of Rehabilitation Medicine of Korean Medicine, Dongguk University, 27 Dongguk-ro, Goyang 10326, Korea. Electronic address: kimklar@dongguk.ac.kr.
  • Seok Ho Kang
    Department of Urology, Korea University School of Medicine, Seoul, Korea.
  • Kwan Hyi Lee
    Biomaterials Research Center, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea.