Automated Neural Architecture Search for Cardiac Amyloidosis Classification from [18F]-Florbetaben PET Images.

Journal: Journal of imaging informatics in medicine
Published Date:

Abstract

Medical image classification using convolutional neural networks (CNNs) is promising but often requires extensive manual tuning for optimal model definition. Neural architecture search (NAS) automates this process, reducing human intervention significantly. This study applies NAS to [18F]-Florbetaben PET cardiac images for classifying cardiac amyloidosis (CA) sub-types (amyloid light chain (AL) and transthyretin amyloid (ATTR)) and controls. Following data preprocessing and augmentation, an evolutionary cell-based NAS approach with a fixed network macro-structure is employed, automatically deriving cells' micro-structure. The algorithm is executed five times, evaluating 100 mutating architectures per run on an augmented dataset of 4048 images (originally 597), totaling 5000 architectures evaluated. The best network (NAS-Net) achieves 76.95% overall accuracy. K-fold analysis yields mean ± SD percentages of sensitivity, specificity, and accuracy on the test dataset: AL subjects (98.7 ± 2.9, 99.3 ± 1.1, 99.7 ± 0.7), ATTR-CA subjects (93.3 ± 7.8, 78.0 ± 2.9, 70.9 ± 3.7), and controls (35.8 ± 14.6, 77.1 ± 2.0, 96.7 ± 4.4). NAS-derived network performance rivals manually determined networks in the literature while using fewer parameters, validating its automatic approach's efficacy.

Authors

  • Filippo Bargagna
    University of Pisa, Pisa, Italy. filippo.bargagna@phd.unipi.it.
  • Donato Zigrino
    Department of Information Engineering, University of Pisa, Via G. Caruso 16, 56122, Pisa, Italy.
  • Lisa Anita De Santi
    University of Pisa, Pisa, Italy.
  • Dario Genovesi
    Fondazione Toscana "G. Monasterio", Pisa, Italy.
  • Michele Scipioni
    Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
  • Brunella Favilli
    Fondazione Toscana "G. Monasterio", Pisa, Italy.
  • Giuseppe Vergaro
    Institute of Life Sciences, Scuola Superiore Sant'Anna, Pisa, Italy.
  • Michele Emdin
    Cardiology and Cardiovascular Medicine Department, Fondazione Toscana G. Monasterio, Via Giuseppe Moruzzi, 1, 56124 Pisa, Italy.
  • Assuero Giorgetti
    Fondazione Toscana "G. Monasterio", Pisa, Italy.
  • Vincenzo Positano
    Fondazione Toscana "G. Monasterio", Pisa, Italy.
  • Maria Filomena Santarelli
    CNR Institute of Clinical Physiology, CNR Research Area-Via Moruzzi, 1, 56124, Pisa, Italy. mariafilomena.santarelli@cnr.it.