Developing and validating machine learning models to predict next-day extubation.

Journal: Scientific reports
Published Date:

Abstract

Criteria to identify patients who are ready to be liberated from mechanical ventilation (MV) are imprecise, often resulting in prolonged MV or reintubation, both of which are associated with adverse outcomes. Daily protocol-driven assessment of the need for MV leads to earlier extubation but requires dedicated personnel. We sought to determine whether machine learning (ML) applied to the electronic health record could predict next-day extubation. We examined 37 clinical features aggregated from 12AM-8AM on each patient-ICU-day from a single-center prospective cohort study of patients in our quaternary care medical ICU who received MV. We also tested our models on an external test set from a community hospital ICU in our health care system. We used three data encoding/imputation strategies and built XGBoost, LightGBM, logistic regression, LSTM, and RNN models to predict next-day extubation. We compared model predictions and actual events to examine how model-driven care might have differed from actual care. Our internal cohort included 448 patients and 3,095 ICU days, and our external test cohort had 333 patients and 2,835 ICU days. The best model (LSTM) predicted next-day extubation with an AUROC of 0.870 (95% CI 0.834-0.902) on the internal test cohort and 0.870 (95% CI 0.848-0.885) on the external test cohort. Across multiple model types, measures previously demonstrated to be important in determining readiness for extubation were found to be most informative, including plateau pressure and Richmond Agitation Sedation Scale (RASS) score. Our model often predicted patients to be stable for extubation in the days preceding their actual extubation, with 63.8% of predicted extubations occurring within three days of true extubation. Our findings suggest that an ML model may serve as a useful clinical decision support tool rather than complete replacement of clinical judgement. However, any ML-based model should be compared with protocol-based practice in a prospective, randomized controlled trial to determine improvement in outcomes while maintaining safety as well as cost effectiveness.

Authors

  • Samuel W Fenske
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Alec Peltekian
    Department of Electrical and Computer Engineering, Northwestern University, Evanston, USA.
  • Mengjia Kang
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Nikolay S Markov
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Mengou Zhu
    Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Kevin Grudzinski
    Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Melissa J Bak
    Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Anna Pawlowski
    Enterprise Data Warehouse, Northwestern Medicine, Chicago, USA.
  • Vishu Gupta
    Department of Electrical and Computer Engineering, Northwestern University, Evanston, IL, 60208, USA.
  • Yuwei Mao
    ECE Department, Northwestern University, Evanston, Illinois 60208, United States.
  • Stanislav Bratchikov
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Thomas Stoeger
    Faculty of Sciences, Institute of Molecular Life Sciences, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland; Life Science Zurich Graduate School, Ph.D. program in Systems Biology, Switzerland.
  • Luke V Rasmussen
    Northwestern University, Feinberg School of Medicine, Chicago, IL, USA.
  • Alok N Choudhary
    Department of Electrical and Computer Engineering, Northwestern University, Evanston, USA.
  • Alexander V Misharin
    Division of Pulmonary and Critical Care Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
  • Benjamin D Singer
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • G R Scott Budinger
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA.
  • Richard G Wunderink
  • Ankit Agrawal
    Northwestern University, Evanston, IL 60201 USA.
  • Catherine A Gao
    Division of Pulmonary and Critical Care, Northwestern University Feinberg School of Medicine, Chicago, USA. catherine.gao@northwestern.edu.