Demixed principal component analysis of neural population data.

Journal: eLife
Published Date:

Abstract

Neurons in higher cortical areas, such as the prefrontal cortex, are often tuned to a variety of sensory and motor variables, and are therefore said to display mixed selectivity. This complexity of single neuron responses can obscure what information these areas represent and how it is represented. Here we demonstrate the advantages of a new dimensionality reduction technique, demixed principal component analysis (dPCA), that decomposes population activity into a few components. In addition to systematically capturing the majority of the variance of the data, dPCA also exposes the dependence of the neural representation on task parameters such as stimuli, decisions, or rewards. To illustrate our method we reanalyze population data from four datasets comprising different species, different cortical areas and different experimental tasks. In each case, dPCA provides a concise way of visualizing the data that summarizes the task-dependent features of the population response in a single figure.

Authors

  • Dmitry Kobak
    Champalimaud Neuroscience Program, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Wieland Brendel
    Champalimaud Neuroscience Program, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Christos Constantinidis
    Wake Forest University School of Medicine, Winston-Salem, United States.
  • Claudia E Feierstein
    Champalimaud Neuroscience Program, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Adam Kepecs
    Cold Spring Harbor Laboratory, Cold Spring Harbor, United States.
  • Zachary F Mainen
    Champalimaud Neuroscience Program, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Xue-Lian Qi
    Wake Forest University School of Medicine, Winston-Salem, United States.
  • Ranulfo Romo
    Instituto de Fisiología Celular-Neurociencias, Universidad Nacional Autónoma de México, Mexico City, Mexico.
  • Naoshige Uchida
    Harvard University, Cambridge, United States.
  • Christian K Machens
    Champalimaud Neuroscience Program, Champalimaud Centre for the Unknown, Lisbon, Portugal.