AIMC Topic: Biological Ontologies
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Harnessing Ontologies to Improve Prescription in Pediatric Medicine.
Studies in health technology and informatics
Jan 1, 2018
There are many drug databases, but sometimes the data quality may result in wrong medication for patients. Results that it is very important to provide a good quality drug information, supply structured information and build useful relations between ...
Ontology-Guided Markerless Navigation and Situational Awareness for Endoscopic Surgery.
Studies in health technology and informatics
Jan 1, 2018
Optical navigation systems help surgeons find their way through the complex anatomy of a patient. However, such systems are accident-sensitive, time-consuming and difficult to use because of their complicated technical requirements such as the settin...
Metadata Import from RDF to i2b2.
Studies in health technology and informatics
Jan 1, 2018
Metadata management is an important task in medical informatics and highly affects the gain out of existing health information data. Data Warehouse solutions like Informatics for Integrating Biology and the Bedside (i2b2) are common tools for identif...
Matching Ontologies to HL7 FHIR Towards Their Syntactic and Semantic Similarity.
Studies in health technology and informatics
Jan 1, 2018
Current medical systems need to be able to communicate complex and detailed medical data securely and efficiently. However, the quantity of available healthcare data is rising rapidly, far exceeding the capacity to deliver personal or public health b...
The Role of Axiomatically-Rich Ontologies in Transforming Medical Data to Knowledge.
Studies in health technology and informatics
Jan 1, 2018
In the biomedical domain, there exist a number of common data models (CDM) that have experienced wide uptake. However, none of these has emerged as the common model. Recently, the demand for integrating and analyzing increasingly large data sets in c...
Elements for an Ontology of Care in the Field of Artificial Intelligence.
Studies in health technology and informatics
Jan 1, 2018
An ontology of care is a formal, explicit specification of a shared conceptualization. Constructing an ontology is a process that requires four elements: knowledge object, subject that knows, knowledge operation and result. These elements configure t...
Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation.
Database : the journal of biological databases and curation
Jan 1, 2018
http://biomodels.caltech.edu.
YummyData: providing high-quality open life science data.
Database : the journal of biological databases and curation
Jan 1, 2018
Many life science datasets are now available via Linked Data technologies, meaning that they are represented in a common format (the Resource Description Framework), and are accessible via standard APIs (SPARQL endpoints). While this is an important ...
Identification of errors in the IEDB using ontologies.
Database : the journal of biological databases and curation
Jan 1, 2018
The Immune Epitope Database (IEDB) is a free online resource that has manually curated over 18 500 references from the scientific literature. Our database presents experimental data relating to the recognition of immune epitopes by the adaptive immun...
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.
Database : the journal of biological databases and curation
Jan 1, 2018
The Immune Epitope Database (IEDB), at www.iedb.org, has the mission to make published experimental data relating to the recognition of immune epitopes easily available to the scientific public. By presenting curated data in a searchable database, we...
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