AIMC Topic: Drug Discovery

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Explainability and white box in drug discovery.

Chemical biology & drug design
Recently, artificial intelligence (AI) techniques have been increasingly used to overcome the challenges in drug discovery. Although traditional AI techniques generally have high accuracy rates, there may be difficulties in explaining the decision pr...

Artificial Intelligence in Drug Toxicity Prediction: Recent Advances, Challenges, and Future Perspectives.

Journal of chemical information and modeling
Toxicity prediction is a critical step in the drug discovery process that helps identify and prioritize compounds with the greatest potential for safe and effective use in humans, while also reducing the risk of costly late-stage failures. It is esti...

Magicmol: a light-weighted pipeline for drug-like molecule evolution and quick chemical space exploration.

BMC bioinformatics
The flourishment of machine learning and deep learning methods has boosted the development of cheminformatics, especially regarding the application of drug discovery and new material exploration. Lower time and space expenses make it possible for sci...

DeepCancerMap: A versatile deep learning platform for target- and cell-based anticancer drug discovery.

European journal of medicinal chemistry
Discovering new anticancer drugs has been widely concerned and remains an open challenge. Target- and phenotypic-based experimental screening represent two mainstream anticancer drug discovery methods, which suffer from time-consuming, labor-intensiv...

DrugormerDTI: Drug Graphormer for drug-target interaction prediction.

Computers in biology and medicine
Drug-target interactions (DTI) prediction is a crucial task in drug discovery. Existing computational methods accelerate the drug discovery in this respect. However, most of them suffer from low feature representation ability, significantly affecting...

Novel Molecular Representations Using Neumann-Cayley Orthogonal Gated Recurrent Unit.

Journal of chemical information and modeling
Advances in deep neural networks (DNNs) have made a very powerful machine learning method available to researchers across many fields of study, including the biomedical and cheminformatics communities, where DNNs help to improve tasks such as protein...

Harmonizing across datasets to improve the transferability of drug combination prediction.

Communications biology
Combination treatment has multiple advantages over traditional monotherapy in clinics, thus becoming a target of interest for many high-throughput screening (HTS) studies, which enables the development of machine learning models predicting the respon...

The Impact of Supervised Learning Methods in Ultralarge High-Throughput Docking.

Journal of chemical information and modeling
Structure-based virtual screening methods are, nowadays, one of the key pillars of computational drug discovery. In recent years, a series of studies have reported docking-based virtual screening campaigns of large databases ranging from hundreds to ...

Artificial intelligence assisted identification of potential tau aggregation inhibitors: ligand- and structure-based virtual screening, in silico ADME, and molecular dynamics study.

Molecular diversity
Alzheimer's disease (AD) is a severe, growing, multifactorial disorder affecting millions of people worldwide characterized by cognitive decline and neurodegeneration. The accumulation of tau protein into paired helical filaments is one of the major ...

Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation.

IEEE/ACM transactions on computational biology and bioinformatics
Effectively identifying compound-protein interactions (CPIs) is crucial for new drug design, which is an important step in silico drug discovery. Current machine learning methods for CPI prediction mainly use one-demensional (1D) compound/protein str...