AIMC Topic: Drug Discovery

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Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks.

IEEE/ACM transactions on computational biology and bioinformatics
Drug-drug interactions are one of the main concerns in drug discovery. Accurate prediction of drug-drug interactions plays a key role in increasing the efficiency of drug research and safety when multiple drugs are co-prescribed. With various data so...

Reverse tracking from drug-induced transcriptomes through multilayer molecular networks reveals hidden drug targets.

Computers in biology and medicine
Identifying molecular targets of a drug is an essential process for drug discovery and development. The recent in-silico approaches are usually based on the structure information of chemicals and proteins. However, 3D structure information is hard to...

A Systematic Review of Deep Learning Methodologies Used in the Drug Discovery Process with Emphasis on In Vivo Validation.

International journal of molecular sciences
The discovery and development of new drugs are extremely long and costly processes. Recent progress in artificial intelligence has made a positive impact on the drug development pipeline. Numerous challenges have been addressed with the growing explo...

BiComp-DTA: Drug-target binding affinity prediction through complementary biological-related and compression-based featurization approach.

PLoS computational biology
Drug-target binding affinity prediction plays a key role in the early stage of drug discovery. Numerous experimental and data-driven approaches have been developed for predicting drug-target binding affinity. However, experimental methods highly rely...

De novo drug design based on Stack-RNN with multi-objective reward-weighted sum and reinforcement learning.

Journal of molecular modeling
CONTEXT: In recent decades, drug development has become extremely important as different new diseases have emerged. However, drug discovery is a long and complex process with a very low success rate, and methods are needed to improve the efficiency o...

A compact review of progress and prospects of deep learning in drug discovery.

Journal of molecular modeling
BACKGROUND: Drug discovery processes, such as new drug development, drug synergy, and drug repurposing, consume significant yearly resources. Computer-aided drug discovery can effectively improve the efficiency of drug discovery. Traditional computer...

Deep Learning-Based Modeling of Drug-Target Interaction Prediction Incorporating Binding Site Information of Proteins.

Interdisciplinary sciences, computational life sciences
Chemogenomics, also known as proteochemometrics, covers various computational methods for predicting interactions between related drugs and targets on large-scale data. Chemogenomics is used in the early stages of drug discovery to predict the off-ta...

Improvement of multi-task learning by data enrichment: application for drug discovery.

Journal of computer-aided molecular design
Multi-task learning in deep neural networks has become a topic of growing importance in many research fields, including drug discovery. However, applying multi-task learning poses new challenges in improving prediction performance. This study investi...

AlphaFold, allosteric, and orthosteric drug discovery: Ways forward.

Drug discovery today
Drug discovery is arguably a highly challenging and significant interdisciplinary aim. The stunning success of the artificial intelligence-powered AlphaFold, whose latest version is buttressed by an innovative machine-learning approach that integrate...

QuantumTox: Utilizing quantum chemistry with ensemble learning for molecular toxicity prediction.

Computers in biology and medicine
Molecular toxicity prediction plays an important role in drug discovery, which is directly related to human health and drug fate. Accurately determining the toxicity of molecules can help weed out low-quality molecules in the early stage of drug disc...