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Information Storage and Retrieval

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Classification of Veterinary Subjects in Medical Literature and Clinical Summaries.

Studies in health technology and informatics
INTRODUCTION: Human and veterinary medicine are practiced separately, but literature databases such as Pubmed include articles from both fields. This impedes supporting clinical decisions with automated information retrieval, because treatment consid...

Extending the TOP Framework with an Ontology-Based Text Search Component.

Studies in health technology and informatics
INTRODUCTION: Constructing search queries that deal with complex concepts is a challenging task without proficiency in the underlying query language - which holds true for either structured or unstructured data. Medical data might encompass both type...

Generative commonsense knowledge subgraph retrieval for open-domain dialogue response generation.

Neural networks : the official journal of the International Neural Network Society
Grounding on a commonsense knowledge subgraph can help the model generate more informative and diverse dialogue responses. Prior Traverse-based works explicitly retrieve a subgraph from the external knowledge base (eKB). Notably, the available knowle...

Optimizing biomedical information retrieval with a keyword frequency-driven prompt enhancement strategy.

BMC bioinformatics
BACKGROUND: Mining the vast pool of biomedical literature to extract accurate responses and relevant references is challenging due to the domain's interdisciplinary nature, specialized jargon, and continuous evolution. Early natural language processi...

Using Retrieval-Augmented Generation to Capture Molecularly-Driven Treatment Relationships for Precision Oncology.

Studies in health technology and informatics
Modern generative artificial intelligence techniques like retrieval-augmented generation (RAG) may be applied in support of precision oncology treatment discussions. Experts routinely review published literature for evidence and recommendations of tr...

Optimizing Data Extraction: Harnessing RAG and LLMs for German Medical Documents.

Studies in health technology and informatics
In the field of medical data analysis, converting unstructured text documents into a structured format suitable for further use is a significant challenge. This study introduces an automated local deployed data privacy secure pipeline that uses open-...

Exploring Offline Large Language Models for Clinical Information Extraction: A Study of Renal Histopathological Reports of Lupus Nephritis Patients.

Studies in health technology and informatics
Open source, lightweight and offline generative large language models (LLMs) hold promise for clinical information extraction due to their suitability to operate in secured environments using commodity hardware without token cost. By creating a simpl...

Building a Natural Language Interface for FHIR Clinical Terminology Server.

Studies in health technology and informatics
While Fast Healthcare Interoperability Resources (FHIR) clinical terminology server enables quick and easy search and retrieval of coded medical data, it still has some drawbacks. When searching, any typographical errors, variations in word forms, or...

Boosting cross-modal retrieval in remote sensing via a novel unified attention network.

Neural networks : the official journal of the International Neural Network Society
With the rapid advent and abundance of remote sensing data in different modalities, cross-modal retrieval tasks have gained importance in the research community. Cross-modal retrieval belongs to the research paradigm in which the query is of one moda...

Learning to match patients to clinical trials using large language models.

Journal of biomedical informatics
OBJECTIVE: This study investigates the use of Large Language Models (LLMs) for matching patients to clinical trials (CTs) within an information retrieval pipeline. Our objective is to enhance the process of patient-trial matching by leveraging the se...