AIMC Topic: Protein Folding

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Deep convolutional networks for quality assessment of protein folds.

Bioinformatics (Oxford, England) Dec 1, 2018
MOTIVATION: The computational prediction of a protein structure from its sequence generally relies on a method to assess the quality of protein models. Most assessment methods rank candidate models using heavily engineered structural features, define...
Neural Networks, Computer Algorithms Computational Biology Proteins Protein Folding
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DeepSF: deep convolutional neural network for mapping protein sequences to folds.

Bioinformatics (Oxford, England) Apr 15, 2018
MOTIVATION: Protein fold recognition is an important problem in structural bioinformatics. Almost all traditional fold recognition methods use sequence (homology) comparison to indirectly predict the fold of a target protein based on the fold of a te...
Humans Neural Networks, Computer Software Animals Computational Biology Models, Molecular Protein Folding Sequence Alignment Sequence Analysis, Protein
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NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers.

Bioinformatics (Oxford, England) Aug 1, 2017
MOTIVATION: Recent CASP experiments have witnessed exciting progress on folding large-size non-humongous proteins with the assistance of co-evolution based contact predictions. The success is however anecdotal due to the requirement of the contact pr...
Neural Networks, Computer Machine Learning Computational Biology Models, Molecular Bayes Theorem Protein Conformation Protein Folding
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An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.

Bioinformatics (Oxford, England) Mar 15, 2017
MOTIVATION: Protein fold classification is a critical step in protein structure prediction. There are two possible ways to classify protein folds. One is through template-based fold assignment and the other is ab-initio prediction using machine learn...
Software Algorithms Computational Biology Support Vector Machine Proteins Protein Folding
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[Enhancement of Coprinus cinereus peroxidase in Pichia pastoris by co-expression chaperone PDI and Ero1].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology Dec 1, 2015
The 1,095 bp gene encoding peroxidase from Coprinus cinereus was synthesized and integrated into the genome of Pichia pastoris with a highly inducible alcohol oxidase. The recombinant CiP (rCiP) fused with the a-mating factor per-pro leader sequence ...
Peptides Culture Media Mass Spectrometry Glycoproteins Fermentation Peroxidases Saccharomyces cerevisiae Pichia Cytoplasm Coprinus Mating Factor Oxidoreductases Acting on Sulfur Group Donors Protein Disulfide-Isomerases Protein Folding Saccharomyces cerevisiae Proteins
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