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Zebrafish

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Structure and function in artificial, zebrafish and human neural networks.

Physics of life reviews
Network science provides a set of tools for the characterization of the structure and functional behavior of complex systems. Yet a major problem is to quantify how the structural domain is related to the dynamical one. In other words, how the divers...

An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of ovaries.

Development (Cambridge, England)
Computational analysis of bio-images by deep learning (DL) algorithms has made exceptional progress in recent years and has become much more accessible to non-specialists with the development of ready-to-use tools. The study of oogenesis mechanisms a...

EmbryoNet: using deep learning to link embryonic phenotypes to signaling pathways.

Nature methods
Evolutionarily conserved signaling pathways are essential for early embryogenesis, and reducing or abolishing their activity leads to characteristic developmental defects. Classification of phenotypic defects can identify the underlying signaling mec...

Toward sustainable culture media: Using artificial intelligence to optimize reduced-serum formulations for cultivated meat.

The Science of the total environment
When considering options for future foods, cell culture approaches are at the fore, however, culture media to support the process has been identified as a significant contributor to the overall global warming potential (GWP) and cost of cultivated me...

Model discovery to link neural activity to behavioral tasks.

eLife
Brains are not engineered solutions to a well-defined problem but arose through selective pressure acting on random variation. It is therefore unclear how well a model chosen by an experimenter can relate neural activity to experimental conditions. H...

A deep learning framework for quantitative analysis of actin microridges.

NPJ systems biology and applications
Microridges are evolutionarily conserved actin-rich protrusions present on the apical surface of squamous epithelial cells. In zebrafish epidermal cells, microridges form self-evolving patterns due to the underlying actomyosin network dynamics. Howev...