Multimodal feature fusion machine learning for predicting chronic injury induced by engineered nanomaterials.

Journal: Nature communications
PMID:

Abstract

Concerns regarding chronic injuries (e.g., fibrosis and carcinogenesis) induced by nanoparticles raised public health concerns and need to be rapidly assessed in hazard identification. Although in silico analysis is commonly used for risk assessment of chemicals, predicting chronic in vivo nanotoxicity remains challenging due to the intricate interactions at multiple interfaces like nano-biofluids and nano-subcellular organelles. Herein, we develop a multimodal feature fusion analysis framework to predict the fibrogenic potential of metal oxide nanoparticles (MeONPs) in female mice. Treating each nano-bio interface as an independent entity, eighty-seven features derived from MeONP-lung interactions are used to develop a machine learning-based predictive framework for lung fibrosis. We identify cell damage and cytokine (IL-1β and TGF-β1) production in macrophages and epithelial cells as key events closely associated with particle size, surface charge, and lysosome interactions. Experimental validations show that the developed in silico model has 85% accuracy. Our findings demonstrate the potential usefulness of this predictive model for risk assessment of nanomaterials and in assisting regulatory decision-making. While the model is developed based on 52 MeONPs, further validation using a larger nanoparticle library is necessary to confirm its broader applicability.

Authors

  • Yang Huang
    School of Computer and Electronic Information, Nanjing Normal University, Nanjing 210023, China.
  • Jiayu Cao
    School of Public Health, Soochow University, Suzhou, Jiangsu, 215123, China.
  • Xuehua Li
    Key Laboratory of Industrial Ecology and Environmental Engineering (MOE), School of Environmental Science and Technology, Dalian University of Technology, Linggong Road 2, Dalian 116024, China.
  • Qing Yang
    School of Nursing, Chengdu Medical College, Chengdu, China.
  • Qianqian Xie
    Department of Biomedical Informatics and Data Science, School of Medicine, Yale University, New Haven, CT 06510, United States.
  • Xi Liu
    Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions, Suzhou Medical College, Soochow University, Suzhou, Jiangsu 215123, China.
  • Xiaoming Cai
    Center for Genetic Epidemiology and Genomics, School of Public Health, Suzhou Medical College, Soochow University, Suzhou, Jiangsu 215123, China.
  • Jingwen Chen
    Key Laboratory of Industrial Ecology and Environmental Engineering (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian, 116024, China. Electronic address: jwchen@dlut.edu.cn.
  • Huixiao Hong
    National Center for Toxicological Research, U.S. Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR, 72079, USA. Electronic address: Huixiao.Hong@fda.hhs.gov.
  • Ruibin Li
    Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions, Suzhou Medical College, Soochow University, Suzhou, Jiangsu 215123, China.