Developing approaches to incorporate donor-lung computed tomography images into machine learning models to predict severe primary graft dysfunction after lung transplantation.

Journal: American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons
Published Date:

Abstract

Primary graft dysfunction (PGD) is a common complication after lung transplantation associated with poor outcomes. Although risk factors have been identified, the complex interactions between clinical variables affecting PGD risk are not well understood, which can complicate decisions about donor-lung acceptance. Previously, we developed a machine learning model to predict grade 3 PGD using donor and recipient electronic health record data, but it lacked granular information from donor-lung computed tomography (CT) scans, which are routinely assessed during offer review. In this study, we used a gated approach to determine optimal methods for analyzing donor-lung CT scans among patients receiving first-time, bilateral lung transplants at a single center over 10 years. We assessed 4 computer vision approaches and fused the best with electronic health record data at 3 points in the machine learning process. A total of 160 patients had donor-lung CT scans for analysis. The best imaging-only approach employed a 3D ResNet model, yielding median (interquartile range) areas under the receiver operating characteristic and precision-recall curves of 0.63 (0.49-0.72) and 0.48 (0.35-0.6), respectively. Combining imaging with clinical data using late fusion provided the highest performance, with median areas under the receiver operating characteristic and precision-recall curves of 0.74 (0.59-0.85) and 0.61 (0.47-0.72), respectively.

Authors

  • Weiwei Ma
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Inez Oh
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Yixuan Luo
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Sayantan Kumar
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Aditi Gupta
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine in St. Louis, St. Louis, MO, USA. agupta24@wustl.edu.
  • Albert M Lai
    Department of Biomedical Informatics, The Ohio State University, Columbus, OH.; National Institute of Health, Rehabilitation Medicine Department, Mark O. Hatfield Clinical Research Center, Bethesda, MD.
  • Varun Puri
    Department of Surgery, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Daniel Kreisel
    Department of Surgery, Department of Pathology and Immunology, Washington University, St. Louis, Missouri, USA.
  • Andrew E Gelman
    Department of Surgery, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Ruben Nava
    Department of Surgery, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Chad A Witt
    Division of Pulmonary and Critical Care Medicine, Department of Medicine, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Derek E Byers
    Division of Pulmonary and Critical Care Medicine, Department of Medicine, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Laura Halverson
    Division of Pulmonary and Critical Care Medicine, Department of Medicine, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Rodrigo Vazquez-Guillamet
    Division of Pulmonary and Critical Care Medicine, Department of Medicine, Washington University School of Medicine, Saint Louis, Missouri, USA.
  • Philip R O Payne
    Institute for Informatics, Data Science and Biostatistics, Washington University School of Medicine in St. Louis, St. Louis, MO, USA.
  • Aristeidis Sotiras
    Department of Radiology and Institute of Informatics, Washington University in St. Luis, St. Luis, MO63110, USA.
  • Hao Lu
    Huazhong University of Science and Technology, Wuhan, China.
  • Khalid Niazi
    Department of Pathology, The Ohio State University, Columbus, OH, USA.
  • Metin N Gurcan
    Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA. Electronic address: metin.gurcan@osumc.edu.
  • Ramsey R Hachem
    Division of Respiratory, Critical Care, and Occupational Pulmonary Medicine, University of Utah, Salt Lake City, Utah, USA.
  • Andrew P Michelson
    Institute for Informatics, Washington University School of Medicine in St. Louis, St. Louis, Missouri, USA.