STAR protocols
May 14, 2024
The advent of single-cell multi-omics sequencing technology makes it possible for researchers to leverage multiple modalities for individual cells. Here, we present a protocol to perform integrative analysis of high-dimensional single-cell multimodal...
STAR protocols
May 2, 2024
To supply chemical structures of polymers for machine learning applications, decoding is necessary. Here, we present a protocol for generating polymer fingerprints (PFPs), which are representations of molecular structures, using a polymer-specific de...
STAR protocols
Apr 27, 2024
Here, we present a workflow for analyzing multi-omics data of plasma samples in patients with post-COVID condition (PCC). Applicable to various diseases, we outline steps for data preprocessing and integrating diverse assay datasets. Then, we detail ...
STAR protocols
Apr 11, 2024
Shapley values from cooperative game theory are adapted for explaining machine learning predictions. For large feature sets used in machine learning, Shapley values are approximated. We present a protocol for two techniques for explaining support vec...
STAR protocols
Feb 2, 2024
Manual curation of bacterial cell detections in microscopy images remains a time-consuming and laborious task. This work offers a comprehensive, step-by-step tutorial on training a support vector machine to autonomously distinguish between good and b...
STAR protocols
Jan 9, 2024
Here, we present a protocol for developing an inorganic-organic hybrid interphase layer using the self-assembled monolayers technique to enhance the surface of the lithium metal anode. We describe steps for extracting organic molecules from open-sour...
STAR protocols
Dec 15, 2023
Neighborhood physical disorder (PD), characterized by disruptions and irregularities in spatial elements, is associated with negative economic, social, and public health outcomes. Here, we present a protocol to quantitatively assess PD utilizing a ra...
STAR protocols
Oct 30, 2023
Amid a surge in waste volume, the need to achieve sustainable waste treatment has become increasingly important. Here, we present a protocol for the design and accelerated optimization of a waste-to-energy system using artificial intelligence tools. ...
STAR protocols
Oct 27, 2023
RNA-based sample discrimination and classification can be used to provide biological insights and/or distinguish between clinical groups. However, finding informative differences between sample groups can be challenging due to the multidimensional an...
STAR protocols
Oct 25, 2023
Biomedical knowledge graphs (BKGs) provide a new paradigm for managing abundant biomedical knowledge efficiently. Today's artificial intelligence techniques enable mining BKGs to discover new knowledge. Here, we present a protocol for implementing a ...