AIMC Topic: Algorithms

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End-to-end interpretable disease-gene association prediction.

Briefings in bioinformatics
Identifying disease-gene associations is a fundamental and critical biomedical task towards understanding molecular mechanisms, the diagnosis and treatment of diseases. It is time-consuming and expensive to experimentally verify causal links between ...

A review of enzyme design in catalytic stability by artificial intelligence.

Briefings in bioinformatics
The design of enzyme catalytic stability is of great significance in medicine and industry. However, traditional methods are time-consuming and costly. Hence, a growing number of complementary computational tools have been developed, e.g. ESMFold, Al...

Analysis of super-enhancer using machine learning and its application to medical biology.

Briefings in bioinformatics
The analysis of super-enhancers (SEs) has recently attracted attention in elucidating the molecular mechanisms of cancer and other diseases. SEs are genomic structures that strongly induce gene expression and have been reported to contribute to the o...

Inter-domain distance prediction based on deep learning for domain assembly.

Briefings in bioinformatics
AlphaFold2 achieved a breakthrough in protein structure prediction through the end-to-end deep learning method, which can predict nearly all single-domain proteins at experimental resolution. However, the prediction accuracy of full-chain proteins is...

DEPP: Deep Learning Enables Extending Species Trees using Single Genes.

Systematic biology
Placing new sequences onto reference phylogenies is increasingly used for analyzing environmental samples, especially microbiomes. Existing placement methods assume that query sequences have evolved under specific models directly on the reference phy...

Towards an Explainable AI-Based Tool to Predict Preterm Birth.

Studies in health technology and informatics
Preterm birth (PTB) is defined as delivery occurring before 37 weeks of gestation. In this paper, Artificial Intelligence (AI)-based predictive models are adapted to accurately estimate the probability of PTB. In doing so, pregnant women' objective r...

Domain Knowledge-Driven Generation of Synthetic Healthcare Data.

Studies in health technology and informatics
Healthcare longitudinal data collected around patients' life cycles, today offer a multitude of opportunities for healthcare transformation utilizing artificial intelligence algorithms. However, access to "real" healthcare data is a big challenge due...

Assessing the FAIRness of Deep Learning Models in Cardiovascular Disease Using Computed Tomography Images: Data and Code Perspective.

Studies in health technology and informatics
The interest in the application of AI in medicine has intensely increased over the past decade with most of the changes in the past five years. Most recently, the application of deep learning algorithms in prediction and classification of cardiovascu...

The Necessity of Multiple Data Sources for ECG-Based Machine Learning Models.

Studies in health technology and informatics
Even though the interest in machine learning studies is growing significantly, especially in medicine, the imbalance between study results and clinical relevance is more pronounced than ever. The reasons for this include data quality and interoperabi...

Benchmarking the Impact of Noise on Deep Learning-Based Classification of Atrial Fibrillation in 12-Lead ECG.

Studies in health technology and informatics
Electrocardiography analysis is widely used in various clinical applications and Deep Learning models for classification tasks are currently in the focus of research. Due to their data-driven character, they bear the potential to handle signal noise ...