AMIA ... Annual Symposium proceedings. AMIA Symposium
Jan 11, 2024
Biomedical ontologies are repositories of knowledge that encapsulate biomedical terms and the relationships between them. When visualized, ontologies are complex graphs, where each node represents one biomedical concept, and links express binary rela...
AMIA ... Annual Symposium proceedings. AMIA Symposium
Jan 11, 2024
Biomedical ontologies are a key component in many systems for the analysis of textual clinical data. They are employed to organize information about a certain domain relying on a hierarchy of different classes. Each class maps a concept to items in a...
Journal of biomedical informatics
Dec 20, 2023
With the emergence of health data warehouses and major initiatives to collect and analyze multi-modal and multisource data, data organization becomes central. In the PACIFIC-PRESERVED (PhenomApping, ClassIFication, and Innovation for Cardiac Dysfunct...
Journal of biomedical semantics
Dec 11, 2023
BACKGROUND: The FAIR principles recommend the use of controlled vocabularies, such as ontologies, to define data and metadata concepts. Ontologies are currently modelled following different approaches, sometimes describing conflicting definitions of ...
BMC medical informatics and decision making
Nov 28, 2023
BACKGROUNDS: The size of medical strategies is expected to grow in conjunction with the expansion of modern diseases' complexity. When a strategy includes more than ten statements, its manual management becomes very challenging, and in some cases, im...
Journal of biomedical informatics
Nov 18, 2023
BACKGROUND: Content coverage of patient safety ontology and classification systems should be evaluated to provide a guide for users to select appropriate ones for specific applications. In this review, we identified and compare content coverage of pa...
Med (New York, N.Y.)
Nov 13, 2023
BACKGROUND: Navigating the clinical literature to determine the optimal clinical management for rare diseases presents significant challenges. We introduce the Medical Action Ontology (MAxO), an ontology specifically designed to organize medical proc...
International journal of medical informatics
Nov 8, 2023
BACKGROUND: Head and Neck Cancer (HNC) has a high incidence and prevalence in the worldwide population. The broad terminology associated with these diseases and their multimodality treatments generates large amounts of heterogeneous clinical data, wh...
Journal of biomedical semantics
Oct 19, 2023
BACKGROUND: Biomedical computational systems benefit from ontologies and their associated mappings. Indeed, aligned ontologies in life sciences play a central role in several semantic-enabled tasks, especially in data exchange. It is crucial to maint...
Journal of biomedical semantics
Sep 28, 2023
BACKGROUND: Ontologies play a key role in the management of medical knowledge because they have the properties to support a wide range of knowledge-intensive tasks. The dynamic nature of knowledge requires frequent changes to the ontologies to keep t...