AIMC Topic: Coronaviridae

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Deepvirusclassifier: a deep learning tool for classifying SARS-CoV-2 based on viral subtypes within the coronaviridae family.

BMC bioinformatics Jul 5, 2024
PURPOSE: In this study, we present DeepVirusClassifier, a tool capable of accurately classifying Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) viral sequences among other subtypes of the coronaviridae family. This classification is ach...
Humans Neural Networks, Computer COVID-19 SARS-CoV-2 Deep Learning Genome, Viral Coronaviridae
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Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning.

PLoS pathogens Apr 20, 2021
The COVID-19 pandemic has demonstrated the serious potential for novel zoonotic coronaviruses to emerge and cause major outbreaks. The immediate animal origin of the causative virus, SARS-CoV-2, remains unknown, a notoriously challenging task for eme...
Machine Learning Animals Phylogeny Spike Glycoprotein, Coronavirus Genome, Viral Biological Evolution Coronaviridae Coronaviridae Infections
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PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses.

Scientific reports Feb 5, 2021
Viral co-infections occur in COVID-19 patients, potentially impacting disease progression and severity. However, there is currently no dedicated method to identify viral co-infections in patient RNA-seq data. We developed PACIFIC, a deep-learning alg...
Humans Neural Networks, Computer COVID-19 SARS-CoV-2 Sensitivity and Specificity Deep Learning RNA-Seq Coinfection COVID-19 Testing Orthomyxoviridae RNA Viruses RNA Virus Infections Coronaviridae Metapneumovirus Rhinovirus
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