AIMC Topic: Drug Discovery

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Deep Learning in Drug Discovery and Medicine; Scratching the Surface.

Molecules (Basel, Switzerland)
The practice of medicine is ever evolving. Diagnosing disease, which is often the first step in a cure, has seen a sea change from the discerning hands of the neighborhood physician to the use of sophisticated machines to use of information gleaned f...

Discovering Highly Potent Molecules from an Initial Set of Inactives Using Iterative Screening.

Journal of chemical information and modeling
The versatility of similarity searching and quantitative structure-activity relationships to model the activity of compound sets within given bioactivity ranges (i.e., interpolation) is well established. However, their relative performance in the com...

Machine Learning for Drug-Target Interaction Prediction.

Molecules (Basel, Switzerland)
Identifying drug-target interactions will greatly narrow down the scope of search of candidate medications, and thus can serve as the vital first step in drug discovery. Considering that in vitro experiments are extremely costly and time-consuming, h...

Fréchet ChemNet Distance: A Metric for Generative Models for Molecules in Drug Discovery.

Journal of chemical information and modeling
The new wave of successful generative models in machine learning has increased the interest in deep learning driven de novo drug design. However, method comparison is difficult because of various flaws of the currently employed evaluation metrics. We...

Prototype-Based Compound Discovery Using Deep Generative Models.

Molecular pharmaceutics
Designing a new drug is a lengthy and expensive process. As the space of potential molecules is very large ( Polishchuk , P. G. ; Madzhidov , T. I. ; Varnek , A. Estimation of the size of drug-like chemical space based on GDB-17 data . J. Comput.-Aid...

Toxic Colors: The Use of Deep Learning for Predicting Toxicity of Compounds Merely from Their Graphic Images.

Journal of chemical information and modeling
The majority of computational methods for predicting toxicity of chemicals are typically based on "nonmechanistic" cheminformatics solutions, relying on an arsenal of QSAR descriptors, often vaguely associated with chemical structures, and typically ...

Drug Repurposing Using Deep Embeddings of Gene Expression Profiles.

Molecular pharmaceutics
Computational drug repositioning requires assessment of the functional similarities among compounds. Here, we report a new method for measuring compound functional similarity based on gene expression data. This approach takes advantage of deep neural...