AIMC Topic: Language

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Health-Related Content in Transformer-Based Language Models: Exploring Bias in Domain General vs. Domain Specific Training Sets.

Studies in health technology and informatics
In this communication, we demonstrate that the bias observed in domain general training sets with health-related content is not improved in domain specific health-communication corpora, contra.

AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.

Bioinformatics (Oxford, England)
MOTIVATION: Biomedical named entity recognition (BioNER) seeks to automatically recognize biomedical entities in natural language text, serving as a necessary foundation for downstream text mining tasks and applications such as information extraction...

Artificial Intelligence for Oncology Nursing Authors: Potential Utility and Concerns About Large Language Model Chatbots.

Oncology nursing forum
Artificial intelligence is a revolution in the computing and data scientist era that has led to excitement and controversy in many fields, including research and publishing. As we move further into the artificial intelligence.

Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model.

Bioinformatics (Oxford, England)
MOTIVATION: Identifying the B-cell epitopes is an essential step for guiding rational vaccine development and immunotherapies. Since experimental approaches are expensive and time-consuming, many computational methods have been designed to assist B-c...

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets.

Bioinformatics (Oxford, England)
MOTIVATION: Human traits are typically represented in both the biomedical literature and large population studies as descriptive text strings. Whilst a number of ontologies exist, none of these perfectly represent the entire human phenome and exposom...

NEREL-BIO: a dataset of biomedical abstracts annotated with nested named entities.

Bioinformatics (Oxford, England)
MOTIVATION: This article describes NEREL-BIO-an annotation scheme and corpus of PubMed abstracts in Russian and smaller number of abstracts in English. NEREL-BIO extends the general domain dataset NEREL by introducing domain-specific entity types. NE...

Can Negation Be Depicted? Comparing Human and Machine Understanding of Visual Representations.

Cognitive science
There is a widely held view that visual representations (images) do not depict negation, for example, as expressed by the sentence, "the train is not coming." The present study focuses on the real-world visual representations of photographs and comic...

ARAX: a graph-based modular reasoning tool for translational biomedicine.

Bioinformatics (Oxford, England)
MOTIVATION: With the rapidly growing volume of knowledge and data in biomedical databases, improved methods for knowledge-graph-based computational reasoning are needed in order to answer translational questions. Previous efforts to solve such challe...