AIMC Topic: Machine Learning

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A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces.

International journal of molecular sciences
Understanding protein-protein interactions is a key challenge in biochemistry. In this work, we describe a more accurate methodology to predict Hot-Spots (HS) in protein-protein interfaces from their native complex structure compared to previous publ...

Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1.

Gene
Epigenetic factors are known to correlate with gene expression in the existing studies. However, quantitative models that accurately classify the highly and lowly expressed genes based on epigenetic factors are currently lacking. In this study, a new...

Reducing false alarms in the ICU by quantifying self-similarity of multimodal biosignals.

Physiological measurement
False arrhythmia alarms pose a major threat to the quality of care in today's ICU. Thus, the PhysioNet/Computing in Cardiology Challenge 2015 aimed at reducing false alarms by exploiting multimodal cardiac signals recorded by a patient monitor. False...

Reduction of false arrhythmia alarms using signal selection and machine learning.

Physiological measurement
In this paper, we propose an algorithm that classifies whether a generated cardiac arrhythmia alarm is true or false. The large number of false alarms in intensive care is a severe issue. The noise peaks caused by alarms can be high and in a noisy en...

Suppression of false arrhythmia alarms in the ICU: a machine learning approach.

Physiological measurement
This paper presents a novel approach for false alarm suppression using machine learning tools. It proposes a multi-modal detection algorithm to find the true beats using the information from all the available waveforms. This method uses a variety of ...

Improved Correction of Atmospheric Pressure Data Obtained by Smartphones through Machine Learning.

Computational intelligence and neuroscience
A correction method using machine learning aims to improve the conventional linear regression (LR) based method for correction of atmospheric pressure data obtained by smartphones. The method proposed in this study conducts clustering and regression ...

Applying GIS and Machine Learning Methods to Twitter Data for Multiscale Surveillance of Influenza.

PloS one
Traditional methods for monitoring influenza are haphazard and lack fine-grained details regarding the spatial and temporal dynamics of outbreaks. Twitter gives researchers and public health officials an opportunity to examine the spread of influenza...

Clinical chemistry in higher dimensions: Machine-learning and enhanced prediction from routine clinical chemistry data.

Clinical biochemistry
Big Data is having an impact on many areas of research, not the least of which is biomedical science. In this review paper, big data and machine learning are defined in terms accessible to the clinical chemistry community. Seven myths associated with...

Dynamic Bayesian Network for Accurate Detection of Peptides from Tandem Mass Spectra.

Journal of proteome research
A central problem in mass spectrometry analysis involves identifying, for each observed tandem mass spectrum, the corresponding generating peptide. We present a dynamic Bayesian network (DBN) toolkit that addresses this problem by using a machine lea...

Predicting the Presence of Uncommon Elements in Unknown Biomolecules from Isotope Patterns.

Analytical chemistry
The determination of the molecular formula is one of the earliest and most important steps when investigating the chemical nature of an unknown compound. Common approaches use the isotopic pattern of a compound measured using mass spectrometry. Compu...