AIMC Topic: Medical Informatics

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Discontinuous named entities in clinical text: A systematic literature review.

Journal of biomedical informatics
OBJECTIVE: Extracting named entities from clinical free-text presents unique challenges, particularly when dealing with discontinuous entities-mentions that are separated by unrelated words. Traditional NER methods often struggle to accurately identi...

BiomedRAG: A retrieval augmented large language model for biomedicine.

Journal of biomedical informatics
Retrieval-augmented generation (RAG) involves a solution by retrieving knowledge from an established database to enhance the performance of large language models (LLM). , these models retrieve information at the sentence or paragraph level, potential...

Eight quick tips for biologically and medically informed machine learning.

PLoS computational biology
Machine learning has become a powerful tool for computational analysis in the biomedical sciences, with its effectiveness significantly enhanced by integrating domain-specific knowledge. This integration has give rise to informed machine learning, in...

Artificial intelligence after the bedside: co-design of AI-based clinical informatics workflows to routinely analyse patient-reported experience measures in hospitals.

BMJ health & care informatics
OBJECTIVE: To co-design artificial intelligence (AI)-based clinical informatics workflows to routinely analyse patient-reported experience measures (PREMs) in hospitals.

ESR Essentials: how to get to valuable radiology AI: the role of early health technology assessment-practice recommendations by the European Society of Medical Imaging Informatics.

European radiology
AI tools in radiology are revolutionising the diagnosis, evaluation, and management of patients. However, there is a major gap between the large number of developed AI tools and those translated into daily clinical practice, which can be primarily at...

A multimodal approach for few-shot biomedical named entity recognition in low-resource languages.

Journal of biomedical informatics
In this study, we revisit named entity recognition (NER) in the biomedical domain from a multimodal perspective, with a particular focus on applications in low-resource languages. Existing research primarily relies on unimodal methods for NER, which ...

Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension.

Journal of biomedical informatics
OBJECTIVE: Although deep learning techniques have shown significant achievements, they frequently depend on extensive amounts of hand-labeled data and tend to perform inadequately in few-shot scenarios. The objective of this study is to devise a stra...

FuseLinker: Leveraging LLM's pre-trained text embeddings and domain knowledge to enhance GNN-based link prediction on biomedical knowledge graphs.

Journal of biomedical informatics
OBJECTIVE: To develop the FuseLinker, a novel link prediction framework for biomedical knowledge graphs (BKGs), which fully exploits the graph's structural, textual and domain knowledge information. We evaluated the utility of FuseLinker in the graph...

Exploring the Impact of GitHub Copilot on Health Informatics Education.

Applied clinical informatics
BACKGROUND:  The use of artificial intelligence-driven code completion tools, particularly the integration of GitHub Copilot with Visual Studio, has potential implications for Health Informatics education, particularly for students learning SQL and P...

Prompt Engineering Paradigms for Medical Applications: Scoping Review.

Journal of medical Internet research
BACKGROUND: Prompt engineering, focusing on crafting effective prompts to large language models (LLMs), has garnered attention for its capabilities at harnessing the potential of LLMs. This is even more crucial in the medical domain due to its specia...