AIMC Topic: Natural Language Processing

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FooDis: A food-disease relation mining pipeline.

Artificial intelligence in medicine
Nowadays, it is really important and crucial to follow the new biomedical knowledge that is presented in scientific literature. To this end, Information Extraction pipelines can help to automatically extract meaningful relations from textual data tha...

Medication event extraction in clinical notes: Contribution of the WisPerMed team to the n2c2 2022 challenge.

Journal of biomedical informatics
In this work, we describe the findings of the 'WisPerMed' team from their participation in Track 1 (Contextualized Medication Event Extraction) of the n2c2 2022 challenge. We tackle two tasks: (i) medication extraction, which involves extracting all ...

KEBLM: Knowledge-Enhanced Biomedical Language Models.

Journal of biomedical informatics
Pretrained language models (PLMs) have demonstrated strong performance on many natural language processing (NLP) tasks. Despite their great success, these PLMs are typically pretrained only on unstructured free texts without leveraging existing struc...

Using Natural Language Processing to Predict Fatal Drug Overdose From Autopsy Narrative Text: Algorithm Development and Validation Study.

JMIR public health and surveillance
BACKGROUND: Fatal drug overdose surveillance informs prevention but is often delayed because of autopsy report processing and death certificate coding. Autopsy reports contain narrative text describing scene evidence and medical history (similar to p...

On the fractal patterns of language structures.

PloS one
Natural Language Processing (NLP) makes use of Artificial Intelligence algorithms to extract meaningful information from unstructured texts, i.e., content that lacks metadata and cannot easily be indexed or mapped onto standard database fields. It ha...

A Joint Extraction System Based on Conditional Layer Normalization for Health Monitoring.

Sensors (Basel, Switzerland)
Natural language processing (NLP) technology has played a pivotal role in health monitoring as an important artificial intelligence method. As a key technology in NLP, relation triplet extraction is closely related to the performance of health monito...

Exploring Transformer and Graph Convolutional Networks for Human Mobility Modeling.

Sensors (Basel, Switzerland)
The estimation of human mobility patterns is essential for many components of developed societies, including the planning and management of urbanization, pollution, and disease spread. One important type of mobility estimator is the next-place predic...

A deep learning approach for medication disposition and corresponding attributes extraction.

Journal of biomedical informatics
OBJECTIVE: This article summarizes our approach to extracting medication and corresponding attributes from clinical notes, which is the focus of track 1 of the 2022 National Natural Language Processing (NLP) Clinical Challenges(n2c2) shared task.

The use of artificial intelligence for automating or semi-automating biomedical literature analyses: A scoping review.

Journal of biomedical informatics
OBJECTIVE: Evidence-based medicine (EBM) is a decision-making process based on the conscious and judicious use of the best available scientific evidence. However, the exponential increase in the amount of information currently available likely exceed...