AIMC Topic: Natural Language Processing

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Evaluation of automatic video captioning using direct assessment.

PloS one
We present Direct Assessment, a method for manually assessing the quality of automatically-generated captions for video. Evaluating the accuracy of video captions is particularly difficult because for any given video clip there is no definitive groun...

Integrating Language Model and Reading Control Gate in BLSTM-CRF for Biomedical Named Entity Recognition.

IEEE/ACM transactions on computational biology and bioinformatics
Biomedical named entity recognition (Bio-NER) is an important preliminary step for many biomedical text mining tasks. The current mainstream methods for NER are based on the neural networks to avoid the complex hand-designed features derived from var...

Distant supervision for relation extraction with hierarchical selective attention.

Neural networks : the official journal of the International Neural Network Society
Distant supervised relation extraction is an important task in the field of natural language processing. There are two main shortcomings for most state-of-the-art methods. One is that they take all sentences of an entity pair as input, which would re...

Expanding the Diversity of Texts and Applications: Findings from the Section on Clinical Natural Language Processing of the International Medical Informatics Association Yearbook.

Yearbook of medical informatics
OBJECTIVES:  To summarize recent research and present a selection of the best papers published in 2017 in the field of clinical Natural Language Processing (NLP).

Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks.

Yearbook of medical informatics
OBJECTIVES:  To review the latest scientific challenges organized in clinical Natural Language Processing (NLP) by highlighting the tasks, the most effective methodologies used, the data, and the sharing strategies.

Risk prediction using natural language processing of electronic mental health records in an inpatient forensic psychiatry setting.

Journal of biomedical informatics
OBJECTIVE: Instruments rating risk of harm to self and others are widely used in inpatient forensic psychiatry settings. A potential alternate or supplementary means of risk prediction is from the automated analysis of case notes in Electronic Health...

Biomedical event extraction based on GRU integrating attention mechanism.

BMC bioinformatics
BACKGROUND: Biomedical event extraction is a crucial task in biomedical text mining. As the primary forum for international evaluation of different biomedical event extraction technologies, BioNLP Shared Task represents a trend in biomedical text min...

Machine Learning Based Toxicity Prediction: From Chemical Structural Description to Transcriptome Analysis.

International journal of molecular sciences
Toxicity prediction is very important to public health. Among its many applications, toxicity prediction is essential to reduce the cost and labor of a drug's preclinical and clinical trials, because a lot of drug evaluations (cellular, animal, and c...

Trie-based rule processing for clinical NLP: A use-case study of n-trie, making the ConText algorithm more efficient and scalable.

Journal of biomedical informatics
OBJECTIVE: To develop and evaluate an efficient Trie structure for large-scale, rule-based clinical natural language processing (NLP), which we call n-trie.