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Environmental Microbiology

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Persistence of influenza on surfaces.

The Journal of hospital infection
BACKGROUND: Close contact transmission (either direct or large droplet/droplet nuclei) is considered the main driver of influenza outbreaks but there is limited information regarding the role of fomites in transmission.

[Influence of magnetic field on the growth of pathogen microorganisms isolated from the indoor environment at the Archivo Nacional de la República de Cuba].

Biomedica : revista del Instituto Nacional de Salud
INTRODUCTION: Electromagnetic pollution has been detected at the Archivo Nacional de la República de Cuba and the influence of extremely low frequency magnetic fields could be quantified with pathogenic microorganisms isolated from the indoor environ...

The contribution of co-reference resolution to supervised relation detection between bacteria and biotopes entities.

BMC bioinformatics
BACKGROUND: The acquisition of knowledge about relations between bacteria and their locations (habitats and geographical locations) in short texts about bacteria, as defined in the BioNLP-ST 2013 Bacteria Biotope task, depends on the detection of co-...

Detection and categorization of bacteria habitats using shallow linguistic analysis.

BMC bioinformatics
BACKGROUND: Information regarding bacteria biotopes is important for several research areas including health sciences, microbiology, and food processing and preservation. One of the challenges for scientists in these domains is the huge amount of inf...

Biomedical event extraction based on GRU integrating attention mechanism.

BMC bioinformatics
BACKGROUND: Biomedical event extraction is a crucial task in biomedical text mining. As the primary forum for international evaluation of different biomedical event extraction technologies, BioNLP Shared Task represents a trend in biomedical text min...

Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring.

Trends in microbiology
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic ideal. Until now, environmental genomics was mainly used as a replacement ...

EMDS-5: Environmental Microorganism image dataset Fifth Version for multiple image analysis tasks.

PloS one
Environmental Microorganism Data Set Fifth Version (EMDS-5) is a microscopic image dataset including original Environmental Microorganism (EM) images and two sets of Ground Truth (GT) images. The GT image sets include a single-object GT image set and...

Combining natural language processing and metabarcoding to reveal pathogen-environment associations.

PLoS neglected tropical diseases
Cryptococcus neoformans is responsible for life-threatening infections that primarily affect immunocompromised individuals and has an estimated worldwide burden of 220,000 new cases each year-with 180,000 resulting deaths-mostly in sub-Saharan Africa...

A new pairwise deep learning feature for environmental microorganism image analysis.

Environmental science and pollution research international
Environmental microorganism (EM) offers a highly efficient, harmless, and low-cost solution to environmental pollution. They are used in sanitation, monitoring, and decomposition of environmental pollutants. However, this depends on the proper identi...