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Pharmaceutical Preparations

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Activity prediction of aminoquinoline drugs based on deep learning.

Biotechnology and applied biochemistry
The results of the traditional prediction method for the activity of aminoquinoline drugs are inaccurate, so the prediction method for the activity of aminoquinoline drugs based on the deep learning is designed. The molecular holographic distance vec...

Machine learning-accelerated quantum mechanics-based atomistic simulations for industrial applications.

Journal of computer-aided molecular design
Atomistic simulations have become an invaluable tool for industrial applications ranging from the optimization of protein-ligand interactions for drug discovery to the design of new materials for energy applications. Here we review recent advances in...

DeepACTION: A deep learning-based method for predicting novel drug-target interactions.

Analytical biochemistry
Drug-target interactions (DTIs) play a key role in drug development and discovery processes. Wet lab prediction of DTIs is time-consuming, expensive, and tedious. Fortunately, computational approaches can identify new interactions (drug-target pairs)...

A Recurrent Neural Network model to predict blood-brain barrier permeability.

Computational biology and chemistry
The rapid development of computational methods and the increasing volume of chemical and biological data have contributed to an immense growth in chemical research. This field of study is known as "chemoinformatics," which is a discipline that uses m...

Selecting machine-learning scoring functions for structure-based virtual screening.

Drug discovery today. Technologies
Interest in docking technologies has grown parallel to the ever increasing number and diversity of 3D models for macromolecular therapeutic targets. Structure-Based Virtual Screening (SBVS) aims at leveraging these experimental structures to discover...

Predicting the frequencies of drug side effects.

Nature communications
A central issue in drug risk-benefit assessment is identifying frequencies of side effects in humans. Currently, frequencies are experimentally determined in randomised controlled clinical trials. We present a machine learning framework for computati...

Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management.

Scientific reports
Various types of drug toxicity can halt the development of a drug. Because drugs are xenobiotics, they inherently have the potential to cause injury. Clarifying the mechanisms of toxicity to evaluate and manage drug safety during drug development is ...

Adverse drug event detection using reason assignments in FDA drug labels.

Journal of biomedical informatics
Adverse drug events (ADEs) are unintended incidents that involve the taking of a medication. ADEs pose significant health and financial problems worldwide. Information about ADEs can inform health care and improve patient safety. However, much of thi...

Pathway-Guided Deep Neural Network toward Interpretable and Predictive Modeling of Drug Sensitivity.

Journal of chemical information and modeling
To efficiently save cost and reduce risk in drug research and development, there is a pressing demand to develop methods to predict drug sensitivity to cancer cells. With the exponentially increasing number of multi-omics data derived from high-thro...

Medical Information Extraction in the Age of Deep Learning.

Yearbook of medical informatics
OBJECTIVES: We survey recent developments in medical Information Extraction (IE) as reported in the literature from the past three years. Our focus is on the fundamental methodological paradigm shift from standard Machine Learning (ML) techniques to ...