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Database Management Systems

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LNTP-MDBN: Big Data Integrated Learning Framework for Heterogeneous Image Set Classification.

Current medical imaging reviews
BACKGROUND: With the explosive growth of global data, the term Big Data describes the enormous size of dataset through the detailed analysis. The big data analytics revealed the hidden patterns and secret correlations among the values. The major chal...

Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder.

Scientific reports
Obsessive and Compulsive Symptoms (OCS) or Obsessive Compulsive Disorder (OCD) in the context of schizophrenia or related disorders are of clinical importance as these are associated with a range of adverse outcomes. Natural Language Processing (NLP)...

Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries.

BMC genomics
BACKGROUND: Knowledge Base Commons (KBCommons) v1.1 is a universal and all-inclusive web-based framework providing generic functionalities for storing, sharing, analyzing, exploring, integrating and visualizing multiple organisms' genomics and integr...

A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Medical ionizing radiation procedures and especially medical imaging are a non negligible source of exposure to patients. Whereas the biological effects of high absorbed doses are relatively well known, the effects of low absorbed doses are still deb...

Expert-augmented machine learning.

Proceedings of the National Academy of Sciences of the United States of America
Machine learning is proving invaluable across disciplines. However, its success is often limited by the quality and quantity of available data, while its adoption is limited by the level of trust afforded by given models. Human vs. machine performanc...

Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management.

Scientific reports
Various types of drug toxicity can halt the development of a drug. Because drugs are xenobiotics, they inherently have the potential to cause injury. Clarifying the mechanisms of toxicity to evaluate and manage drug safety during drug development is ...

Multi-EPL: Accurate multi-source domain adaptation.

PloS one
Given multiple source datasets with labels, how can we train a target model with no labeled data? Multi-source domain adaptation (MSDA) aims to train a model using multiple source datasets different from a target dataset in the absence of target data...

Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.

Journal of the American Medical Informatics Association : JAMIA
BACKGROUND: The increasing complexity of data streams and computational processes in modern clinical health information systems makes reproducibility challenging. Clinical natural language processing (NLP) pipelines are routinely leveraged for the se...

A deep look into radiomics.

La Radiologia medica
Radiomics is a process that allows the extraction and analysis of quantitative data from medical images. It is an evolving field of research with many potential applications in medical imaging. The purpose of this review is to offer a deep look into ...

Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base.

PLoS computational biology
Integrating reference datasets (e.g. from high-throughput experiments) with unstructured and manually-assembled information (e.g. notes or comments from individual researchers) has the potential to tailor bioinformatic analyses to specific needs and ...