AIMC Topic: Programming Languages

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Evolvix BEST Names for semantic reproducibility across code2brain interfaces.

Annals of the New York Academy of Sciences
Names in programming are vital for understanding the meaning of code and big data. We define code2brain (C2B) interfaces as maps in compilers and brains between meaning and naming syntax, which help to understand executable code. While working toward...

SGFSC: speeding the gene functional similarity calculation based on hash tables.

BMC bioinformatics
BACKGROUND: In recent years, many measures of gene functional similarity have been proposed and widely used in all kinds of essential research. These methods are mainly divided into two categories: pairwise approaches and group-wise approaches. Howev...

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track.

Database : the journal of biological databases and curation
Network-based approaches have become extremely important in systems biology to achieve a better understanding of biological mechanisms. For network representation, the Biological Expression Language (BEL) is well designed to collate findings from the...

Executable medical guidelines with Arden Syntax-Applications in dermatology and obstetrics.

Artificial intelligence in medicine
INTRODUCTION: Clinical decision support systems (CDSSs) are being developed to assist physicians in processing extensive data and new knowledge based on recent scientific advances. Structured medical knowledge in the form of clinical alerts or remind...

Evolution of the Arden Syntax: Key Technical Issues from the Standards Development Organization Perspective.

Artificial intelligence in medicine
BACKGROUND: The initial version of the Arden Syntax for Medical Logic Systems was created to facilitate explicit representation of medical logic in a form that could be easily composed and interpreted by clinical experts in order to facilitate clinic...

Transformation of Arden Syntax's medical logic modules into ArdenML for a business rules management system.

Artificial intelligence in medicine
INTRODUCTION: Arden Syntax is a Health Level Seven International (HL7) standard language that is used for representing medical knowledge as logic statements. Arden Syntax Markup Language (ArdenML) is a new representation of Arden Syntax based on XML....

From frames to OWL2: Converting the Foundational Model of Anatomy.

Artificial intelligence in medicine
OBJECTIVE: The Foundational Model of Anatomy (FMA) [Rosse C, Mejino JLV. A reference ontology for bioinformatics: the Foundational Model of Anatomy. J. Biomed. Inform. 2003;36:478-500] is an ontology that represents canonical anatomy at levels rangin...

User-defined functions in the Arden Syntax: An extension proposal.

Artificial intelligence in medicine
BACKGROUND: The Arden Syntax is a knowledge-encoding standard, started in 1989, and now in its 10th revision, maintained by the health level seven (HL7) organization. It has constructs borrowed from several language concepts that were available at th...

Clinical decision support systems at the Vienna General Hospital using Arden Syntax: Design, implementation, and integration.

Artificial intelligence in medicine
INTRODUCTION: The Allgemeines Krankenhaus Informations Management (AKIM) project was started at the Vienna General Hospital (VGH) several years ago. This led to the introduction of a new hospital information system (HIS), and the installation of the ...