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Regulon

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First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes.

Database : the journal of biological databases and curation 29220462
RegulonDB, http://regulondb.ccg.unam.mx.
Databases, Bibliographic Escherichia coli K12 Protein Domains Regulon Serine Endopeptidases Support Vector Machine Transcription Factors
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Application of the random forest algorithm to Streptococcus pyogenes response regulator allele variation: from machine learning to evolutionary models.

Scientific reports 34135390
Group A Streptococcus (GAS) is a globally significant bacterial pathogen. The GAS genotyping gold standard characterises the nucleotide variation of emm, which encodes a surface-exposed protein that is recombinogenic and under immune-based selection ...
Algorithms Alleles Antigens, Bacterial Bacterial Outer Membrane Proteins Bacterial Proteins Carrier Proteins Evolution, Molecular Genes, Bacterial Genetic Variation Genome, Bacterial Humans Machine Learning Regulon Streptococcal Infections Streptococcus pyogenes
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ProPr54 web server: predicting σ promoters and regulon with a hybrid convolutional and recurrent deep neural network.

NAR genomics and bioinformatics 39781509
σ serves as an unconventional sigma factor with a distinct mechanism of transcription initiation, which depends on the involvement of a transcription activator. This unique sigma factor σ is indispensable for orchestrating the transcription of genes ...
Bacterial Proteins Binding Sites Genome, Bacterial Internet Neural Networks, Computer Promoter Regions, Genetic Regulon RNA Polymerase Sigma 54 Sigma Factor Software
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