Journal of the American Medical Informatics Association : JAMIA
Nov 1, 2020
OBJECTIVE: Developing algorithms to extract phenotypes from electronic health records (EHRs) can be challenging and time-consuming. We developed PheMap, a high-throughput phenotyping approach that leverages multiple independent, online resources to s...
Journal of the American Medical Informatics Association : JAMIA
Nov 1, 2020
OBJECTIVE: To develop a collection of concept-relationship-concept tuples to formally represent patients' care context data to inform electronic health record (EHR) development.
Journal of the American Medical Informatics Association : JAMIA
Nov 1, 2020
OBJECTIVE: In recent years numerous studies have achieved promising results in Alzheimer's Disease (AD) detection using automatic language processing. We systematically review these articles to understand the effectiveness of this approach, identify ...
Journal of the American Medical Informatics Association : JAMIA
Nov 1, 2020
OBJECTIVE: Minority oversampling is a standard approach used for adjusting the ratio between the classes on imbalanced data. However, established methods often provide modest improvements in classification performance when applied to data with extrem...
Journal of the American Medical Informatics Association : JAMIA
Nov 1, 2020
OBJECTIVE: The study sought to understand the potential roles of a future artificial intelligence (AI) documentation assistant in primary care consultations and to identify implications for doctors, patients, healthcare system, and technology design ...
Journal of the American Medical Informatics Association : JAMIA
Oct 1, 2020
OBJECTIVE: Normalizing clinical mentions to concepts in standardized medical terminologies, in general, is challenging due to the complexity and variety of the terms in narrative medical records. In this article, we introduce our work on a clinical n...
Journal of the American Medical Informatics Association : JAMIA
Oct 1, 2020
OBJECTIVE: We explored how knowledge embeddings (KEs) learned from the Unified Medical Language System (UMLS) Metathesaurus impact the quality of relation extraction on 2 diverse sets of biomedical texts.
Journal of the American Medical Informatics Association : JAMIA
Oct 1, 2020
OBJECTIVE: The study sought to explore the use of deep learning techniques to measure the semantic relatedness between Unified Medical Language System (UMLS) concepts.
Journal of the American Medical Informatics Association : JAMIA
Oct 1, 2020
OBJECTIVE: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task track 3, focused on medical concept normalization (MCN) in clinical records. This track aimed to assess the state of the art...
Journal of the American Medical Informatics Association : JAMIA
Oct 1, 2020
OBJECTIVE: We sought to assess the need for additional coverage of dietary supplements (DS) in the Unified Medical Language System (UMLS) by investigating (1) the overlap between the integrated DIetary Supplements Knowledge base (iDISK) DS ingredient...
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