AIMC Topic: Antigens

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Prediction of methionine oxidation risk in monoclonal antibodies using a machine learning method.

mAbs
Monoclonal antibodies (mAbs) have become a major class of protein therapeutics that target a spectrum of diseases ranging from cancers to infectious diseases. Similar to any protein molecule, mAbs are susceptible to chemical modifications during the ...

Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences.

BMC genomics
BACKGROUND: The broad heterogeneity of antigen-antibody interactions brings tremendous challenges to the design of a widely applicable learning algorithm to identify conformational B-cell epitopes. Besides the intrinsic heterogeneity introduced by di...

NABP-LSTM-Att: Nanobody-Antigen binding prediction using bidirectional LSTM and soft attention mechanism.

Computational biology and chemistry
In vertebrates, antibody-mediated immunity is a vital component of the immune system, and antibodies have become a rapidly expanding class of therapeutic agents. Nanobodies, a distinct type of antibody, have recently emerged as a stable and cost-effe...

HAIRpred: Prediction of human antibody interacting residues in an antigen from its primary structure.

Protein science : a publication of the Protein Society
In the past, several methods have been developed for predicting conformational B-cell epitopes in antigens that are not specific to any host. Our primary analysis of antibody-antigen complexes indicated a need to develop host-specific B-cell epitopes...

Application of in-silico approaches in subunit vaccines: Overcoming the challenges of antigen and adjuvant development.

Journal of controlled release : official journal of the Controlled Release Society
Subunit vaccines are crucial in preventing modern diseases due to their safety, stability, and ability to elicit targeted immune responses. However, challenges in antigen and adjuvant design hinder their development. Recent advancements in in-silico ...

Dendritic cell-based microrobots for enhanced systemic antigen-specific immune tolerance.

Journal of controlled release : official journal of the Controlled Release Society
Current immunotherapeutic approaches for autoimmune disorders primarily rely on the use of generalized immunosuppressive medications. However, most immune drugs and tolerogenic immunomodulators are insufficient on their own to establish antigen-speci...

MVSF-AB: accurate antibody-antigen binding affinity prediction via multi-view sequence feature learning.

Bioinformatics (Oxford, England)
MOTIVATION: Predicting the binding affinity between antigens and antibodies accurately is crucial for assessing therapeutic antibody effectiveness and enhancing antibody engineering and vaccine design. Traditional machine learning methods have been w...

ParaSurf: a surface-based deep learning approach for paratope-antigen interaction prediction.

Bioinformatics (Oxford, England)
MOTIVATION: Identifying antibody binding sites, is crucial for developing vaccines and therapeutic antibodies, processes that are time-consuming and costly. Accurate prediction of the paratope's binding site can speed up the development by improving ...

AttABseq: an attention-based deep learning prediction method for antigen-antibody binding affinity changes based on protein sequences.

Briefings in bioinformatics
The optimization of therapeutic antibodies through traditional techniques, such as candidate screening via hybridoma or phage display, is resource-intensive and time-consuming. In recent years, computational and artificial intelligence-based methods ...

Artificial Intelligence-Based Counting Algorithm Enables Accurate and Detailed Analysis of the Broad Spectrum of Spot Morphologies Observed in Antigen-Specific B-Cell ELISPOT and FluoroSpot Assays.

Methods in molecular biology (Clifton, N.J.)
Antigen-specific B-cell ELISPOT and multicolor FluoroSpot assays, in which the membrane-bound antigen itself serves as the capture reagent for the antibodies that B cells secrete, inherently result in a broad range of spot sizes and intensities. The ...