AIMC Topic: Computational Biology

Clear Filters Showing 1491 to 1500 of 4583 articles

Identification of glycolysis genes signature for predicting prognosis in malignant pleural mesothelioma by bioinformatics and machine learning.

Frontiers in endocrinology
BACKGROUND: Glycolysis-related genes as prognostic markers in malignant pleural mesothelioma (MPM) is still unclear. We hope to explore the relationship between glycolytic pathway genes and MPM prognosis by constructing prognostic risk models through...

Unsupervised graph-level representation learning with hierarchical contrasts.

Neural networks : the official journal of the International Neural Network Society
Unsupervised graph-level representation learning has recently shown great potential in a variety of domains, ranging from bioinformatics to social networks. Plenty of graph contrastive learning methods have been proposed to generate discriminative gr...

Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks.

Nature communications
Residue-residue distance information is useful for predicting tertiary structures of protein monomers or quaternary structures of protein complexes. Many deep learning methods have been developed to predict intra-chain residue-residue distances of mo...

Application of Computational Biology and Artificial Intelligence in Drug Design.

International journal of molecular sciences
Traditional drug design requires a great amount of research time and developmental expense. Booming computational approaches, including computational biology, computer-aided drug design, and artificial intelligence, have the potential to expedite the...

A lightweight classification of adaptor proteins using transformer networks.

BMC bioinformatics
BACKGROUND: Adaptor proteins play a key role in intercellular signal transduction, and dysfunctional adaptor proteins result in diseases. Understanding its structure is the first step to tackling the associated conditions, spurring ongoing interest i...

Identification of adaptor proteins using the ANOVA feature selection technique.

Methods (San Diego, Calif.)
The adaptor proteins play a crucially important role in regulating lymphocyte activation. Rapid and efficient identification of adaptor proteins is essential for understanding their functions. However, biochemical methods require not only expensive e...

Shared subspace-based radial basis function neural network for identifying ncRNAs subcellular localization.

Neural networks : the official journal of the International Neural Network Society
Non-coding RNAs (ncRNAs) play an important role in revealing the mechanism of human disease for anti-tumor and anti-virus substances. Detecting subcellular locations of ncRNAs is a necessary way to study ncRNA. Traditional biochemical methods are tim...

DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies.

IEEE/ACM transactions on computational biology and bioinformatics
Cell-penetrating peptides (CPPs) are special peptides capable of carrying a variety of bioactive molecules, such as genetic materials, short interfering RNAs and nanoparticles, into cells. Recently, research on CPP has gained substantial interest fro...

MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning.

Genome medicine
Multiple computational approaches have been developed to improve our understanding of genetic variants. However, their ability to identify rare pathogenic variants from rare benign ones is still lacking. Using context annotations and deep learning me...

Multi-omics disease module detection with an explainable Greedy Decision Forest.

Scientific reports
Machine learning methods can detect complex relationships between variables, but usually do not exploit domain knowledge. This is a limitation because in many scientific disciplines, such as systems biology, domain knowledge is available in the form ...