AIMC Topic: Computational Biology

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Evidential meta-model for molecular property prediction.

Bioinformatics (Oxford, England)
MOTIVATION: The usefulness of supervised molecular property prediction (MPP) is well-recognized in many applications. However, the insufficiency and the imbalance of labeled data make the learning problem difficult. Moreover, the reliability of the p...

[Exploring the mechanisms of ferroptosis in non-obstructive azoospermia based on bioinformatics and machine learning].

Zhonghua nan ke xue = National journal of andrology
OBJECTIVE: To explor the potential mechanisms of ferroptosis involvement in non-obstructive azoospermia based on bioinformatics and machine learning methods.

Sequence-based prediction model of protein crystallization propensity using machine learning and two-level feature selection.

Briefings in bioinformatics
Protein crystallization is crucial for biology, but the steps involved are complex and demanding in terms of external factors and internal structure. To save on experimental costs and time, the tendency of proteins to crystallize can be initially det...

Explainable AI for Bioinformatics: Methods, Tools and Applications.

Briefings in bioinformatics
Artificial intelligence (AI) systems utilizing deep neural networks and machine learning (ML) algorithms are widely used for solving critical problems in bioinformatics, biomedical informatics and precision medicine. However, complex ML models that a...

MLNGCF: circRNA-disease associations prediction with multilayer attention neural graph-based collaborative filtering.

Bioinformatics (Oxford, England)
MOTIVATION: CircRNAs play a critical regulatory role in physiological processes, and the abnormal expression of circRNAs can mediate the processes of diseases. Therefore, exploring circRNAs-disease associations is gradually becoming an important area...

Predicting potential microbe-disease associations based on multi-source features and deep learning.

Briefings in bioinformatics
Studies have confirmed that the occurrence of many complex diseases in the human body is closely related to the microbial community, and microbes can affect tumorigenesis and metastasis by regulating the tumor microenvironment. However, there are sti...

MPCLCDA: predicting circRNA-disease associations by using automatically selected meta-path and contrastive learning.

Briefings in bioinformatics
Circular RNA (circRNA) is closely associated with human diseases. Accordingly, identifying the associations between human diseases and circRNA can help in disease prevention, diagnosis and treatment. Traditional methods are time consuming and laborio...

The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.

Nucleic acids research
Computational docking is an instrumental method of the structural biology toolbox. Specifically, integrative modeling software, such as LightDock, arise as complementary and synergetic methods to experimental structural biology techniques. Ubiquitous...