AIMC Topic: Data Curation

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Unsupervised Medical Entity Recognition and Linking in Chinese Online Medical Text.

Journal of healthcare engineering
Online medical text is full of references to medical entities (MEs), which are valuable in many applications, including medical knowledge-based (KB) construction, decision support systems, and the treatment of diseases. However, the diverse and ambig...

Development of an information retrieval tool for biomedical patents.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: The volume of biomedical literature has been increasing in the last years. Patent documents have also followed this trend, being important sources of biomedical knowledge, technical details and curated data, which are put to...

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.

Database : the journal of biological databases and curation
Natural language descriptions of organismal phenotypes, a principal object of study in biology, are abundant in the biological literature. Expressing these phenotypes as logical statements using ontologies would enable large-scale analysis on phenoty...

Automated computer-based detection of encounter behaviours in groups of honeybees.

Scientific reports
Honeybees form societies in which thousands of members integrate their behaviours to act as a single functional unit. We have little knowledge on how the collaborative features are regulated by workers' activities because we lack methods that enable ...

A cascaded approach for Chinese clinical text de-identification with less annotation effort.

Journal of biomedical informatics
With rapid adoption of Electronic Health Records (EHR) in China, an increasing amount of clinical data has been available to support clinical research. Clinical data secondary use usually requires de-identification of personal information to protect ...

RysannMD: A biomedical semantic annotator balancing speed and accuracy.

Journal of biomedical informatics
Recently, both researchers and practitioners have explored the possibility of semantically annotating large and continuously evolving collections of biomedical texts such as research papers, medical reports, and physician notes in order to enable the...

Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora.

Journal of biomedical informatics
OBJECTIVE: The goal of this study is to investigate entity recognition within Electronic Health Records (EHRs) focusing on Spanish and Swedish. Of particular importance is a robust representation of the entities. In our case, we utilized unsupervised...

EHR-based phenotyping: Bulk learning and evaluation.

Journal of biomedical informatics
In data-driven phenotyping, a core computational task is to identify medical concepts and their variations from sources of electronic health records (EHR) to stratify phenotypic cohorts. A conventional analytic framework for phenotyping largely uses ...

Building a comprehensive syntactic and semantic corpus of Chinese clinical texts.

Journal of biomedical informatics
OBJECTIVE: To build a comprehensive corpus covering syntactic and semantic annotations of Chinese clinical texts with corresponding annotation guidelines and methods as well as to develop tools trained on the annotated corpus, which supplies baseline...

NegAIT: A new parser for medical text simplification using morphological, sentential and double negation.

Journal of biomedical informatics
Many different text features influence text readability and content comprehension. Negation is commonly suggested as one such feature, but few general-purpose tools exist to discover negation and studies of the impact of negation on text readability ...