AIMC Topic: Information Storage and Retrieval
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Extracting laboratory test information from paper-based reports.
BMC medical informatics and decision making
Nov 6, 2023
BACKGROUND: In the healthcare domain today, despite the substantial adoption of electronic health information systems, a significant proportion of medical reports still exist in paper-based formats. As a result, there is a significant demand for the ...
ChatGPT: a tool for scientific writing or a threat to integrity?
The British journal of radiology
Oct 24, 2023
The use of ChatGPT as a tool for writing and knowledge integration raises concerns about the potential for its use to replace critical thinking and academic writing skills. While ChatGPT can assist in generating text and suggesting appropriate langua...
Incorporating entity-level knowledge in pretrained language model for biomedical dense retrieval.
Computers in biology and medicine
Sep 28, 2023
In recent years, pre-trained language models (PLMs) have dominated natural language processing (NLP) and achieved outstanding performance in various NLP tasks, including dense retrieval based on PLMs. However, in the biomedical domain, the effectiven...
Integrating domain knowledge for biomedical text analysis into deep learning: A survey.
Journal of biomedical informatics
Jun 7, 2023
The past decade has witnessed an explosion of textual information in the biomedical field. Biomedical texts provide a basis for healthcare delivery, knowledge discovery, and decision-making. Over the same period, deep learning has achieved remarkable...
Clinical named entity recognition and relation extraction using natural language processing of medical free text: A systematic review.
International journal of medical informatics
Jun 5, 2023
BACKGROUND: Natural Language Processing (NLP) applications have developed over the past years in various fields including its application to clinical free text for named entity recognition and relation extraction. However, there has been rapid develo...
Characteristics and Emerging Trends in Research on Rehabilitation Robots from 2001 to 2020: Bibliometric Study.
Journal of medical Internet research
May 31, 2023
BACKGROUND: The past 2 decades have seen rapid development in the use of robots for rehabilitation. Research on rehabilitation robots involves interdisciplinary activities, making it a great challenge to obtain comprehensive insights in this research...
Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature.
Journal of biomedical semantics
May 30, 2023
BACKGROUND: Drug-drug interaction (DDI) information retrieval (IR) is an important natural language process (NLP) task from the PubMed literature. For the first time, active learning (AL) is studied in DDI IR analysis. DDI IR analysis from PubMed abs...
FooDis: A food-disease relation mining pipeline.
Artificial intelligence in medicine
May 20, 2023
Nowadays, it is really important and crucial to follow the new biomedical knowledge that is presented in scientific literature. To this end, Information Extraction pipelines can help to automatically extract meaningful relations from textual data tha...
Development of Indirect Health Data Linkage on Health Product Use and Care Trajectories in France: Systematic Review.
Journal of medical Internet research
May 18, 2023
BACKGROUND: European national disparities in the integration of data linkage (ie, being able to match patient data between databases) into routine public health activities were recently highlighted. In France, the claims database covers almost the wh...
Methodological information extraction from randomized controlled trial publications: a pilot study.
AMIA ... Annual Symposium proceedings. AMIA Symposium
Apr 29, 2023
Most biomedical information extraction (IE) approaches focus on entity types such as diseases, drugs, and genes, and relations such as gene-disease associations. In this paper, we introduce the task of methodological IE to support fine-grained qualit...
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