AIMC Topic: Internet

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BindUP-Alpha: A Webserver for Predicting DNA-and RNA-binding Proteins based on Experimental and Computational Structural Models☆.

Journal of molecular biology
Structural data provides important information on the proteins' function. Recent development of advanced machine learning and artificial intelligence tools, such as AlphaFold, have led to an explosion of predicted protein structures. However, many of...

pLMMoRF: A Web Server That Accurately Predicts Membrane-interacting Molecular Recognition Features by Employing a Protein Language Model.

Journal of molecular biology
Interactions between proteins and lipids are crucial for numerous cellular processes. Some of the lipid interacting segments in protein sequences are intrinsically disordered regions (IDRs), which may gain secondary structures upon binding. We collec...

Digital pesticide: a comprehensive pesticide information database with dynamic web platform for artificial intelligence applications.

Pest management science
BACKGROUND: Pesticides are crucial for protecting crops from pests and diseases to meet the growing global food demand. In the era of artificial intelligence (AI), computer-aided approaches have the potential to significantly enhance the efficiency a...

Assessing the quality of Japanese online breast cancer treatment information using large language models: a comparison of ChatGPT, Claude, and expert evaluations.

Breast cancer (Tokyo, Japan)
BACKGROUND: The internet is a primary source of health information for breast cancer patients, but online content quality varies widely. This study aimed to evaluate the capability of large language models (LLMs), including ChatGPT and Claude, to ass...

Qsarna: An Online Tool for Smart Chemical Space Navigation in Drug Design.

Journal of chemical information and modeling
Drug discovery is a lengthy and resource-intensive process that requires innovative computational techniques to expedite the transition from laboratory research to life-saving medications. Here, we introduce Qsarna, a comprehensive online platform th...

[From the integration of the internet and medicine to the synergy of artificial intelligence and medicine: my perspective on "future medicine" and the development of medical education].

Zhonghua yi xue za zhi
On the occasion of the 110th anniversary of the Chinese Medical Association, this article reflects on the author's over six decades of experience in medical education, including leadership roles as president and dean at multiple medical schools, shar...

Evaluating DeepResearch and DeepThink in anterior cruciate ligament surgery patient education: ChatGPT-4o excels in comprehensiveness, DeepSeek R1 leads in clarity and readability of orthopaedic information.

Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA
PURPOSE: This study compares ChatGPT-4o, equipped with its deep research feature, and DeepSeek R1, equipped with its deepthink feature-both enabling real-time online data access-in generating responses to frequently asked questions (FAQs) about anter...

SHARK: web server for alignment-free homology assessment for intrinsically disordered and unalignable protein regions.

Nucleic acids research
Whereas alignment has been fundamental to sequence-based assessments of protein homology, it is ineffective for intrinsically disordered regions (IDRs) due to their lowered sequence conservation and unique sequence properties. Here, we present a web ...

PrankWeb 4: a modular web server for protein-ligand binding site prediction and downstream analysis.

Nucleic acids research
Knowledge of protein-ligand binding sites (LBSs) is crucial for advancing our understanding of biology and developing practical applications in fields such as medicine or biotechnology. PrankWeb is a web server that allows users to predict LBSs from ...

ASOptimizer: optimizing chemical diversity of antisense oligonucleotides through deep learning.

Nucleic acids research
Antisense oligonucleotides (ASOs) are a promising class of gene therapies that can modulate the gene expression. However, designing ASOs manually is resource-intensive and time-consuming. To address this, we introduce a user-friendly web server for A...