AIMC Topic: Metadata
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YummyData: providing high-quality open life science data.
Database : the journal of biological databases and curation
Jan 1, 2018
Many life science datasets are now available via Linked Data technologies, meaning that they are represented in a common format (the Resource Description Framework), and are accessible via standard APIs (SPARQL endpoints). While this is an important ...
Radiation Oncology Terminology Linker: A Step Towards a Linked Data Knowledge Base.
Studies in health technology and informatics
Jan 1, 2018
Performing image feature extraction in radiation oncology is often dependent on the organ and tumor delineations provided by clinical staff. These delineation names are free text DICOM metadata fields resulting in undefined information, which require...
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.
Bioinformatics (Oxford, England)
Sep 15, 2017
MOTIVATION: The NCBI's Sequence Read Archive (SRA) promises great biological insight if one could analyze the data in the aggregate; however, the data remain largely underutilized, in part, due to the poor structure of the metadata associated with ea...
Finding useful data across multiple biomedical data repositories using DataMed.
Nature genetics
May 26, 2017
The value of broadening searches for data across multiple repositories has been identified by the biomedical research community. As part of the US National Institutes of Health (NIH) Big Data to Knowledge initiative, we work with an international com...
Using an Ontology-Based Approach to Handle Author Affiliations in a Large Biomedical Citation Database.
Studies in health technology and informatics
Jan 1, 2017
To handle differences in affiliation names submitted with biomedical journal articles, we build an affiliation knowledge base named Authority File for Affiliations (AFA) based on ontology principles. There are currently 113,700 affiliation concepts w...
Big Data.
Journal of the American College of Radiology : JACR
Mar 1, 2016
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