AIMC Topic: Permeability

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MultiCycPermea: accurate and interpretable prediction of cyclic peptide permeability using a multimodal image-sequence model.

BMC biology
BACKGROUND: Cyclic peptides, known for their high binding affinity and low toxicity, show potential as innovative drugs for targeting "undruggable" proteins. However, their therapeutic efficacy is often hindered by poor membrane permeability. Over th...

Uncovering blood-brain barrier permeability: a comparative study of machine learning models using molecular fingerprints, and SHAP explainability.

SAR and QSAR in environmental research
This study illustrates the use of chemical fingerprints with machine learning for blood-brain barrier (BBB) permeability prediction. Employing the Blood Brain Barrier Database (B3DB) dataset for BBB permeability prediction, we extracted nine differen...

Leveraging machine learning to predict drug permeation: impact of menthol and limonene as enhancers.

Molecular diversity
The present study aimed to develop robust machine learning (ML) models to predict the skin permeability of poorly water-soluble drugs in the presence of menthol and limonene as penetration enhancers (PEs). The ML models were also applied in virtual s...

FormulationBCS: A Machine Learning Platform Based on Diverse Molecular Representations for Biopharmaceutical Classification System (BCS) Class Prediction.

Molecular pharmaceutics
The Biopharmaceutics Classification System (BCS) has facilitated biowaivers and played a significant role in enhancing drug regulation and development efficiency. However, the productivity of measuring the key discriminative properties of BCS, solubi...

Exploring the Potential of Adaptive, Local Machine Learning in Comparison to the Prediction Performance of Global Models: A Case Study from Bayer's Caco-2 Permeability Database.

Journal of chemical information and modeling
Machine learning (ML) techniques are being widely implemented to fill the gap in simple molecular design guidelines for newer therapeutic modalities in the extended and beyond rule of five chemical space (eRo5, bRo5). These ML techniques predict mole...

Transparent Machine Learning Model to Understand Drug Permeability through the Blood-Brain Barrier.

Journal of chemical information and modeling
The blood-brain barrier (BBB) selectively regulates the passage of chemical compounds into and out of the central nervous system (CNS). As such, understanding the permeability of drug molecules through the BBB is key to treating neurological diseases...

An integrated framework of deep learning and entropy theory for enhanced high-dimensional permeability field identification in heterogeneous aquifers.

Water research
Accurately estimating high-dimensional permeability (k) fields through data assimilation is critical for minimizing uncertainties in groundwater flow and solute transport simulations. However, designing an effective monitoring network to obtain diver...

Prediction of Mycobacterium tuberculosis cell wall permeability using machine learning methods.

Molecular diversity
Tuberculosis (TB) caused by the bacteria Mycobacterium tuberculosis (M. tb), continues to pose a significant worldwide health threat. The advent of drug-resistant strains of the disease highlights the critical need for novel treatments. The unique ce...

Predicting blood-brain barrier permeability of molecules with a large language model and machine learning.

Scientific reports
Predicting the blood-brain barrier (BBB) permeability of small-molecule compounds using a novel artificial intelligence platform is necessary for drug discovery. Machine learning and a large language model on artificial intelligence (AI) tools improv...

Application of machine learning models for property prediction to targeted protein degraders.

Nature communications
Machine learning (ML) systems can model quantitative structure-property relationships (QSPR) using existing experimental data and make property predictions for new molecules. With the advent of modalities such as targeted protein degraders (TPD), the...