AIMC Topic: Plant Breeding

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Sweet pepper yield modeling via deep learning and selection of superior genotypes using GBLUP and MGIDI.

Scientific reports Apr 27, 2025
Intelligent knowledge about Capsicum annuum L. germplasm could lead to effective management of germplasm. Here, 29 accessions of sweet pepper were investigated in two separate randomized complete block design with three replications in the field cond...
Neural Networks, Computer Deep Learning Genotype Capsicum Models, Genetic Plant Breeding Fruit
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Breaking down data silos across companies to train genome-wide predictions: A feasibility study in wheat.

Plant biotechnology journal Apr 20, 2025
Big data, combined with artificial intelligence (AI) techniques, holds the potential to significantly enhance the accuracy of genome-wide predictions. Motivated by the success reported for wheat hybrids, we extended the scope to inbred lines by integ...
Genome-Wide Association Study Genomics Polymorphism, Single Nucleotide Artificial Intelligence Phenotype Feasibility Studies Genome, Plant Plant Breeding Genotype Triticum
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EBMGP: a deep learning model for genomic prediction based on Elastic Net feature selection and bidirectional encoder representations from transformer's embedding and multi-head attention pooling.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Apr 19, 2025
Enhancing early selection through genomic estimated breeding values is pivotal for reducing generation intervals and accelerating breeding programs. Recently, deep learning (DL) approaches have gained prominence in genomic prediction (GP). Here, we i...
Deep Learning Models, Genetic Polymorphism, Single Nucleotide Genomics Plant Breeding
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Biological Prior Knowledge-Embedded Deep Neural Network for Plant Genomic Prediction.

Genes Mar 31, 2025
Genomic prediction is a powerful approach that predicts phenotypic traits from genotypic information, enabling the acceleration of trait improvement in plant breeding. Traditional genomic prediction methods have primarily relied on linear mixed mode...
Genome, Plant Plant Breeding Deep Learning Genome-Wide Association Study Polymorphism, Single Nucleotide Genotype Genomics Neural Networks, Computer Phenotype
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Application of machine learning and genomics for orphan crop improvement.

Nature communications Jan 24, 2025
Orphan crops are important sources of nutrition in developing regions and many are tolerant to biotic and abiotic stressors; however, modern crop improvement technologies have not been widely applied to orphan crops due to the lack of resources avail...
Genomics Crops, Agricultural Machine Learning Plant Breeding
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Cropformer: An interpretable deep learning framework for crop genomic prediction.

Plant communications Dec 16, 2024
Machine learning and deep learning are extensively employed in genomic selection (GS) to expedite the identification of superior genotypes and accelerate breeding cycles. However, a significant challenge with current data-driven deep learning models ...
Genome, Plant Deep Learning Plant Breeding Genomics Oryza Crops, Agricultural Phenotype Polymorphism, Single Nucleotide Zea mays Triticum Genotype Solanum lycopersicum
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Synthetic biology and artificial intelligence in crop improvement.

Plant communications Dec 12, 2024
Synthetic biology plays a pivotal role in improving crop traits and increasing bioproduction through the use of engineering principles that purposefully modify plants through "design, build, test, and learn" cycles, ultimately resulting in improved b...
Artificial Intelligence Crops, Agricultural Gene Editing Genetic Engineering Synthetic Biology Plant Breeding
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Machine learning-enhanced multi-trait genomic prediction for optimizing cannabinoid profiles in cannabis.

The Plant journal : for cell and molecular biology Nov 27, 2024
Cannabis sativa L., known for its medicinal and psychoactive properties, has recently experienced rapid market expansion but remains understudied in terms of its fundamental biology due to historical prohibitions. This pioneering study implements GS ...
Plant Breeding Bayes Theorem Polymorphism, Single Nucleotide Machine Learning Cannabinoids Cannabis Genotype Genomics Genome, Plant Quantitative Trait Loci
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Big data and artificial intelligence-aided crop breeding: Progress and prospects.

Journal of integrative plant biology Oct 28, 2024
The past decade has witnessed rapid developments in gene discovery, biological big data (BBD), artificial intelligence (AI)-aided technologies, and molecular breeding. These advancements are expected to accelerate crop breeding under the pressure of ...
Artificial Intelligence Big Data Crops, Agricultural Plant Breeding
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Machine learning algorithms translate big data into predictive breeding accuracy.

Trends in plant science Oct 26, 2024
Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and environmental data. ML algorithms automatically identify relevant features and use cross-validation to ensure robust models and improve prediction reliability...
Gene-Environment Interaction Plant Breeding Machine Learning Algorithms Big Data Phenotype Genomics
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