AIMC Topic: Gene-Environment Interaction

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Haplotype stacking to improve stability of stripe rust resistance in wheat.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Genotype-by-environment interaction analysis and haplotype-level characterisation provide novel insights into the stability of stripe rust resistance. Breeding selection strategies are proposed to achieve rapid and stable genetic gains across environ...

Effects of using deep learning to predict the geographic origin of barley genebank accessions on genome-environment association studies.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Genome-environment association (GEA) is an approach for identifying adaptive loci by combining genetic variation with environmental parameters, offering potential for improving crop resilience. However, its application to genebank accessions is limit...

Performance of deep-learning-based approaches to improve polygenic scores.

Nature communications
Polygenic scores, which estimate an individual's genetic propensity for a disease or trait, have the potential to become part of genomic healthcare. Neural-network based deep-learning has emerged as a method of intense interest to model complex, nonl...

Bridging Genomic Research Disparities in Osteoporosis GWAS: Insights for Diverse Populations.

Current osteoporosis reports
PURPOSE OF REVIEW: Genome-wide association studies (GWAS) have significantly advanced osteoporosis research by identifying genetic loci associated with bone mineral density (BMD) and fracture risk. However, disparities persist due to the underreprese...

Leveraging Automated Machine Learning for Environmental Data-Driven Genetic Analysis and Genomic Prediction in Maize Hybrids.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Genotype, environment, and genotype-by-environment (G×E) interactions play a critical role in shaping crop phenotypes. Here, a large-scale, multi-environment hybrid maize dataset is used to construct and validate an automated machine learning framewo...

Data-driven discovery of the interplay between genetic and environmental factors in bacterial growth.

Communications biology
A complex interplay of genetic and environmental factors influences bacterial growth. Understanding these interactions is crucial for insights into complex living systems. This study employs a data-driven approach to uncover the principles governing ...

Machine learning algorithms translate big data into predictive breeding accuracy.

Trends in plant science
Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and environmental data. ML algorithms automatically identify relevant features and use cross-validation to ensure robust models and improve prediction reliability...