AIMC Topic: Proteins

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AdptDilatedGCN: Protein-ligand binding affinity prediction based on multi-scale interaction fusion mechanism and dilated GCN.

International journal of biological macromolecules
Predicting protein-ligand binding affinity is crucial for drug discovery. However, existing prediction methods often make insufficient use of the features of proteins and ligands, lack interactions between different information, and have difficulty i...

Massive experimental quantification allows interpretable deep learning of protein aggregation.

Science advances
Protein aggregation is a pathological hallmark of more than 50 human diseases and a major problem for biotechnology. Methods have been proposed to predict aggregation from sequence, but these have been trained and evaluated on small and biased experi...

[Nobel Prize in chemistry 2024: David Baker, Demis Hassabis et John M. Jumper. The revolution of artificial intelligence in structural biology].

Medecine sciences : M/S
The 2024 Nobel Prize in chemistry has been awarded to Demis Hassabis and John M. Jumper (Google DeepMind) for the development of artificial intelligence-guided protein structure prediction and to David Baker (University of Washington, Seattle, USA) f...

Frustration in physiology and molecular medicine.

Molecular aspects of medicine
Molecules provide the ultimate language in terms of which physiology and pathology must be understood. Myriads of proteins participate in elaborate networks of interactions and perform chemical activities coordinating the life of cells. To perform th...

A hybrid variational autoencoder and WGAN with gradient penalty for tertiary protein structure generation.

Scientific reports
Elucidating the tertiary structure of proteins is important for understanding their functions and interactions. While deep neural networks have advanced the prediction of a protein's native structure from its amino acid sequence, the focus on a singl...

Advances in artificial intelligence-envisioned technologies for protein and nucleic acid research.

Drug discovery today
Artificial intelligence (AI) and machine learning (ML) have revolutionized pharmaceutical research, particularly in protein and nucleic acid studies. This review summarizes the current status of AI and ML applications in the pharmaceutical sector, fo...

Emerging frontiers in protein structure prediction following the AlphaFold revolution.

Journal of the Royal Society, Interface
Models of protein structures enable molecular understanding of biological processes. Current protein structure prediction tools lie at the interface of biology, chemistry and computer science. Millions of protein structure models have been generated ...

MGMA-DTI: Drug target interaction prediction using multi-order gated convolution and multi-attention fusion.

Computational biology and chemistry
Accurately predicting drug-target interactions (DTI) is crucial for drug discovery and can reduce drug development costs. Recent deep learning-based DTI predictions have demonstrated promising performance, but they still face two challenges: (i) The ...

LEGOLAS: A Machine Learning Method for Rapid and Accurate Predictions of Protein NMR Chemical Shifts.

Journal of chemical theory and computation
This work introduces LEGOLAS, a fully open source TorchANI-based neural network model designed to predict NMR chemical shifts for protein backbone atoms (N, Cα, Cβ, C', HN, Hα). LEGOLAS has been designed to be fast without loss of accuracy, as our mo...

The AI revolution comes to protein sequencing.

Science (New York, N.Y.)
By identifying unknown proteins, new systems could aid research in many areas.