AIMC Topic: Protein Stability

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Deconvoluting Biophysical Factors that Influence Long-Term Aggregation Rates of High-Concentration Monoclonal Antibody Formulations.

Molecular pharmaceutics
Efficient determination of developable protein drug candidates and stable solution conditions is a key challenge in industrial drug development. Protein aggregation is difficult to predict and can lead to challenges in manufacturing, storage, and pat...

Insights into ionic liquid-enhanced membrane protein stability through machine learning and molecular simulations.

Physical chemistry chemical physics : PCCP
Protein stability plays a critical role in structural elucidation, enzyme activity, and the storage of protein drugs, where ionic liquids (ILs) have emerged as promising protein stabilizers due to their exceptional biocompatibility and superior solub...

GeoEvoBuilder: A deep learning framework for efficient functional and thermostable protein design.

Proceedings of the National Academy of Sciences of the United States of America
While deep learning has advanced protein sequence and function design, engineering highly active and stable proteins still requires labor-intensive iterative computational design and experimentation. There is a critical need for methods capable of di...

MEMO-Stab2: Multi-View Sequence-Based Deep Learning Framework for Predicting Mutation-Induced Stability Changes in Transmembrane Proteins.

Journal of chemical information and modeling
Accurately predicting the impact of point mutations on protein thermodynamic stability is essential for understanding structure-function relationships and guiding protein design. This challenge is particularly acute for transmembrane proteins (TMPs),...

Prediction of aggregation in monoclonal antibodies from molecular surface curvature.

Scientific reports
Protein aggregation is one of the key challenges in the biopharmaceutical industry as its control is crucial in achieving long-term stability and efficacy of biopharmaceuticals. Attempts have been made to develop regression models for predicting the ...

Tuning antibody stability and function by rational designs of framework mutations.

mAbs
Artificial intelligence and machine learning models have been developed to engineer antibodies for specific recognition of antigens. These approaches, however, often focus on the antibody complementarity-determining region (CDR) whilst ignoring the i...

Neural network conditioned to produce thermophilic protein sequences can increase thermal stability.

Scientific reports
This work presents Neural Optimization for Melting-temperature Enabled by Leveraging Translation (NOMELT), a novel approach for designing and ranking high-temperature stable proteins using neural machine translation. The model, trained on over 4 mill...

PILOT: Deep Siamese network with hybrid attention improves prediction of mutation impact on protein stability.

Neural networks : the official journal of the International Neural Network Society
Evaluating the mutation impact on protein stability (ΔΔG) is essential in the study of protein engineering and understanding molecular mechanisms of disease-associated mutations. Here, we propose a novel deep learning framework, PILOT, for improved p...

Integrating Artificial Intelligence and Bioinformatics Methods to Identify Disruptive STAT1 Variants Impacting Protein Stability and Function.

Genes
The Signal Transducer and Activator of Transcription 1 () gene is an essential component of the JAK-STAT signaling pathway. This pathway plays a pivotal role in the regulation of different cellular processes, including immune responses, cell growth,...

AI-enabled alkaline-resistant evolution of protein to apply in mass production.

eLife
Artificial intelligence (AI) models have been used to study the compositional regularities of proteins in nature, enabling it to assist in protein design to improve the efficiency of protein engineering and reduce manufacturing cost. However, in indu...