AI Medical Compendium Topic:
Research Design

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Review of study reporting guidelines for clinical studies using artificial intelligence in healthcare.

BMJ health & care informatics
High-quality research is essential in guiding evidence-based care, and should be reported in a way that is reproducible, transparent and where appropriate, provide sufficient detail for inclusion in future meta-analyses. Reporting guidelines for vari...

A span-graph neural model for overlapping entity relation extraction in biomedical texts.

Bioinformatics (Oxford, England)
MOTIVATION: Entity relation extraction is one of the fundamental tasks in biomedical text mining, which is usually solved by the models from natural language processing. Compared with traditional pipeline methods, joint methods can avoid the error pr...

ModFOLD8: accurate global and local quality estimates for 3D protein models.

Nucleic acids research
Methods for estimating the quality of 3D models of proteins are vital tools for driving the acceptance and utility of predicted tertiary structures by the wider bioscience community. Here we describe the significant major updates to ModFOLD, which ha...

Machine learning in health care and laboratory medicine: General overview of supervised learning and Auto-ML.

International journal of laboratory hematology
Artificial Intelligence (AI) and machine learning (ML) have now spawned a new field within health care and health science research. These new predictive analytics tools are starting to change various facets of our clinical care domains including the ...

An integrated nomogram combining deep learning, Prostate Imaging-Reporting and Data System (PI-RADS) scoring, and clinical variables for identification of clinically significant prostate cancer on biparametric MRI: a retrospective multicentre study.

The Lancet. Digital health
BACKGROUND: Biparametric MRI (comprising T2-weighted MRI and apparent diffusion coefficient maps) is increasingly being used to characterise prostate cancer. Although previous studies have combined Prostate Imaging-Reporting & Data System (PI-RADS)-b...

Machine Scoring of Medical Students' Written Clinical Reasoning: Initial Validity Evidence.

Academic medicine : journal of the Association of American Medical Colleges
PURPOSE: Developing medical students' clinical reasoning requires a structured longitudinal curriculum with frequent targeted assessment and feedback. Performance-based assessments, which have the strongest validity evidence, are currently not feasib...

LBERT: Lexically aware Transformer-based Bidirectional Encoder Representation model for learning universal bio-entity relations.

Bioinformatics (Oxford, England)
MOTIVATION: Natural Language Processing techniques are constantly being advanced to accommodate the influx of data as well as to provide exhaustive and structured knowledge dissemination. Within the biomedical domain, relation detection between bio-e...

Machine learning on microbiome research in gastrointestinal cancer.

Journal of gastroenterology and hepatology
Gastrointestinal cancer maintains the highest incidence and mortality rate among all cancers globally. In addition to genetic causes, it has been reported that individuals' diet and composition of the gastrointestinal microbiome have profound impacts...

DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks.

Neuroinformatics
The extreme complexity of mammalian brains requires a comprehensive deconstruction of neuroanatomical structures. Scientists normally use a brain stereotactic atlas to determine the locations of neurons and neuronal circuits. However, different brain...