AIMC Topic: RNA, Untranslated

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ConF: A Deep Learning Model Based on BiLSTM, CNN, and Cross Multi-Head Attention Mechanism for Noncoding RNA Family Prediction.

Biomolecules Nov 13, 2023
This paper presents ConF, a novel deep learning model designed for accurate and efficient prediction of noncoding RNA families. NcRNAs are essential functional RNA molecules involved in various cellular processes, including replication, transcription...
Humans Deep Learning Base Sequence RNA, Untranslated
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RPI-EDLCN: An Ensemble Deep Learning Framework Based on Capsule Network for ncRNA-Protein Interaction Prediction.

Journal of chemical information and modeling May 9, 2023
Noncoding RNAs (ncRNAs) play crucial roles in many cellular life activities by interacting with proteins. Identification of ncRNA-protein interactions (ncRPIs) is key to understanding the function of ncRNAs. Although a number of computational methods...
Neural Networks, Computer Animals Deep Learning Mice Proteins RNA, Untranslated
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HeadTailTransfer: An efficient sampling method to improve the performance of graph neural network method in predicting sparse ncRNA-protein interactions.

Computers in biology and medicine Mar 15, 2023
Noncoding RNA (ncRNA) is a functional RNA derived from DNA transcription, and most transcribed genes are transcribed into ncRNA. ncRNA is not directly involved in the translation of proteins, but it can participate in gene expression in cells and aff...
Neural Networks, Computer Machine Learning Protein Binding Proteins RNA, Untranslated
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ncDENSE: a novel computational method based on a deep learning framework for non-coding RNAs family prediction.

BMC bioinformatics Feb 27, 2023
BACKGROUND: Although research on non-coding RNAs (ncRNAs) is a hot topic in life sciences, the functions of numerous ncRNAs remain unclear. In recent years, researchers have found that ncRNAs of the same family have similar functions, therefore, it i...
Humans Deep Learning RNA, Untranslated Biological Science Disciplines
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CTRR-ncRNA: A Knowledgebase for Cancer Therapy Resistance and Recurrence Associated Non-coding RNAs.

Genomics, proteomics & bioinformatics Oct 17, 2022
Cancer therapy resistance and recurrence (CTRR) are the dominant causes of death in cancer patients. Recent studies have indicated that non-coding RNAs (ncRNAs) can not only reverse the resistance to cancer therapy but also are crucial biomarkers for...
Humans Artificial Intelligence Biomarkers Neoplasms Knowledge Bases RNA, Untranslated
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Shared subspace-based radial basis function neural network for identifying ncRNAs subcellular localization.

Neural networks : the official journal of the International Neural Network Society Oct 10, 2022
Non-coding RNAs (ncRNAs) play an important role in revealing the mechanism of human disease for anti-tumor and anti-virus substances. Detecting subcellular locations of ncRNAs is a necessary way to study ncRNA. Traditional biochemical methods are tim...
Humans Neural Networks, Computer Computational Biology RNA, Untranslated
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PINC: A Tool for Non-Coding RNA Identification in Plants Based on an Automated Machine Learning Framework.

International journal of molecular sciences Oct 5, 2022
There is evidence that non-coding RNAs play significant roles in the regulation of nutrient homeostasis, development, and stress responses in plants. Accurate identification of ncRNAs is the first step in determining their function. While a number of...
Machine Learning Plants RNA, Untranslated
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A model for predicting ncRNA-protein interactions based on graph neural networks and community detection.

Methods (San Diego, Calif.) Sep 13, 2022
Non-coding RNA (ncRNA) s play an considerable role in the current biological sciences, such as gene transcription, gene expression, etc. Exploring the ncRNA-protein interactions(NPI) is of great significance, while some experimental techniques are ve...
Neural Networks, Computer Artificial Intelligence Algorithms Proteins RNA, Untranslated
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Graph Neural Network with Self-Supervised Learning for Noncoding RNA-Drug Resistance Association Prediction.

Journal of chemical information and modeling Jul 15, 2022
Noncoding RNA(ncRNA) is closely related to drug resistance. Identifying the association between ncRNA and drug resistance is of great significance for drug development. Methods based on biological experiments are often time-consuming and small-scale....
Neural Networks, Computer Computational Biology Supervised Machine Learning Drug Resistance RNA, Untranslated
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Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators.

PLoS computational biology Jul 7, 2022
It is well-established that neural networks can predict or identify structural motifs of non-coding RNAs (ncRNAs). Yet, the neural network based identification of RNA structural motifs is limited by the availability of training data that are often in...
Humans Neural Networks, Computer Nucleotide Motifs RNA, Untranslated
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